Nicotiana sylvestris (wood tobacco): 104240859
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Entry
104240859 CDS
T05026
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104240859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104240859
03036 Chromosome and associated proteins [BR:
nsy03036
]
104240859
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104240859
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104240859
mRNA degradation factors
5'-3' decay
Decapping complex
104240859
Chromosome and associated proteins [BR:
nsy03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104240859
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
TFIIA
Motif
Other DBs
NCBI-GeneID:
104240859
NCBI-ProteinID:
XP_009794053
UniProt:
A0A1U7XT01
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All DBs
Position
1:160145106..160153576
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AA seq
493 aa
AA seq
DB search
MNPRARFQPPGMGRGGGGSGSMHPNTNSNFQPRNPQQYIQRGPLPYQHQQQQQHFQNQQT
QQWLRRNQSPSADSTVDEVEKTVQAEAVDQSSQDWKAKLKIPSPDTRYRTEDVTATKGNE
FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK
IDQDKNAIQAVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL
LVGTPGRILDLAKKGVCILKDCSMLIMDEADKLLSPEFQPSIVQLIRFIPANRQILMFSA
TFPVTVKDFKDRYLNKPYVINLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQSI
IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGI
DIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITFEDRFNLYRIEQELGTEIK
QIPPQIDQAIYCQ
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgagagcaagatttcaaccgccgggaatgggccgtgggggtggaggcagcggg
agtatgcatccaaatactaactctaattttcaacctagaaaccctcaacagtatatacag
agaggtcctttgccctatcagcaccaacagcagcagcagcattttcagaaccagcaaaca
cagcagtggctcagaaggaatcagtcgccatctgctgattctacggttgacgaggttgaa
aagactgtacaggccgaagccgttgaccagagttcacaagattggaaggctaagttgaag
ataccatcacctgatactcgatacagaacggaggatgtgacagcaaccaagggaaatgag
tttgaagactactttcttaagcgtgaactgcttatgggaatttatgaaaagggctttgag
agaccatctccgatccaagaggaaagcattccaattgctctaactggaagtgacattttg
gctagggccaaaaatggaactgggaagactgctgccttctgcattcctgctttagagaaa
attgatcaagacaagaatgcaattcaagctgttattcttgtcccaactcgagaattggcc
ctccaaacatctcaagtttgtaaagaactggggaagcacttaaaaattcaagtcatggtt
accactggggggactagcttaaaggatgacattatgagactgtatcagccagttcattta
cttgtcggaactcctggaagaattcttgaccttgcaaaaaagggagtgtgcattttgaag
gattgctccatgcttataatggatgaggctgataagcttctctcaccagaattccaacct
tccattgtacagctgatccgtttcatacctgcaaatcgccagatcttgatgttttctgct
acattccctgttactgtcaaggactttaaagatagatatttgaacaaaccatatgttatc
aacctcatggatgaacttacactcaagggtataacacaattttatgcttttgttgaagaa
agacagaagattcactgccttaacactctcttctcaaagcttcaaattaaccaatcaatt
attttttgcaactctgtaaatagagtggaacttcttgcgaagaagattactgagctgggc
tattcatgcttctacattcatgccaagatgcttcaagatcataggaacagggtgtttcat
gacttccgcaatggtgcctgcaggaaccttgtttgtactgatttgtttactagaggaata
gatattcaagcagtcaatgttgttatcaattttgatttccctaagaactcagaaacgtat
ttgcacagggttggacggtcagggagattcggacaccttggtttagctgttaacctgatt
acttttgaggatcgcttcaatctgtacagaattgaacaagaactaggaacagagatcaag
caaattcctccacagatagatcaagctatatattgccagtga
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