Nicotiana sylvestris (wood tobacco): 104242252
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Entry
104242252 CDS
T05026
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104242252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104242252
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104242252
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104242252
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
104242252
NCBI-ProteinID:
XP_009795581
UniProt:
A0A1U7Y0Z3
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All DBs
Position
6:complement(116791594..116807144)
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AA seq
660 aa
AA seq
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MSGLLNSSLNGSASNLPDNTGRSFPSSFSPQSGAASPLYHHSGNIQGLHNMHGSFNVPNM
SGTLGSRNTTINNVPSSGVQQSGNSLSSGRFASNNIPVALSQISQGSSHGHSSITSRGGM
SVVGNTGYSSNTNGVGGSIPGILPTSAAIGNRSSVPGLGMSPILGNAGPRMSNSVGNIVG
GNIGRSISSGAGLSVPGLASRLNLTANSGSGNLNVQGSNRLMSGVLQQASPQVMSMFGNS
YPPAGGPLSQNHIQAVGNLNSMGMLNDLNSNDGSPFDINDFPQLSSRPSSAGGPQGQLGS
LRKQIVQQNQEFSIQNEDFPALPGFKGGNADYGMDLHQKEQLHDNTLSMMQQQQFSMGRS
GGFNLGGTYSSLRTQQQQQQQHAPSVSNSGLSFSNVNNQDPLYLHGSDVFSSSHSSYHQQ
SGGPPGIGLRPLNSPSTVSGIGSYDQLIQQYQQHQSQSQFRLQQMSALGQPYRDQGMKSM
QAQATPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLHKAFGSPWSDEPA
KGDPEFTVPQCYYAKQPPPLNQAYFSKFQLDTLFYIFYSMPKDEAQLYAANELYNRGWFY
HREHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIRKDNFVLHYEMLEKRPLLPQH
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggttactcaattcatctctaaacgggtcagcttcaaatctccctgacaacacc
ggacgctcatttccttcatctttctctcctcaatctggtgcagcttcccctctttatcat
cactctggaaatattcagggccttcataacatgcatgggagttttaatgttcctaacatg
tcgggtacacttggttcaagaaacacaacaataaataatgtcccttcaagcggtgtccag
caatctggaaatagcctctctagtggtcgttttgcatcaaataatattcccgtagccctt
tcacagatatcccaaggaagttctcatggtcattccagcattacaagtagaggtggtatg
agtgttgttggtaacacgggatatagtagtaacactaatggtgttgggggttctattcct
ggaattctgccaacctctgcggccattggtaatcgaagctctgttccaggccttggcatg
tccccaattttgggaaatgctggtccaaggatgtcaaactcagttggaaatatagttgga
ggcaacattgggagaagcatcagctctggtgcaggattgtctgtgcctggtcttgcttct
agactaaatttgactgcgaacagtggttctggaaatttaaatgttcaaggatctaatagg
ctaatgagtggtgtcctccagcaagcctctccgcaggtaatgtctatgtttggtaattca
tatcctcctgctggtggtccactatctcagaaccatatccaagcagtcggcaaccttaat
tctatgggaatgctgaatgatctgaattcaaatgatgggtctccatttgatataaacgat
ttccctcagctaagcagccgacctagttctgctggagggcctcaaggacaattgggttca
ctgcgaaaacaaattgttcaacaaaatcaggaattcagcattcaaaatgaagatttccca
gccttgcctggatttaaaggtggcaatgctgattatggtatggatctacaccagaaagaa
caactccatgataatactctttctatgatgcagcagcagcagttctctatgggcagatct
ggtggctttaacttgggagggacatactcatcacttcgcacacagcagcaacagcaacag
caacatgccccatcggtgagtaatagtggtctctctttttcaaatgttaacaaccaggat
ccactatatttacatggttcagatgtcttctcgtcatcgcactccagttatcaccaacag
tctggaggacctcctggtatcgggttacgacctcttaattctccaagtactgtttctggt
attggctcatacgatcagcttatccagcagtatcaacaacatcagagtcaatcccaattt
cgactgcagcaaatgtctgctttaggtcagccgtacagggatcagggcatgaaatccatg
caggcccaagctacccctgacccttttggtatgcttggtttactaagtgtaataaggatg
agcgatccggatctgacttctcttgcacttggaattgatctaactactcttggattgaat
ttgaactctgccgaaaatttacacaaggcatttggttccccatggtctgatgagcctgcc
aagggtgatccagaatttactgtaccgcaatgttattatgccaagcaaccacctcctcta
aatcaagcatacttctccaagtttcagttagacactttgttttacattttctacagcatg
ccaaaggatgaagcccaattatatgctgctaatgaattgtataatcggggctggttttac
cacagagaacatcgattatggtttatgagggtcgccaacatggagcctcttgtcaagacc
aacgcctatgagagaggatcttatatatgttttgatccaaacacatgggaaacaatccgc
aaggataattttgtgctccactatgagatgttggaaaaaagacctcttctacctcagcac
taa
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