KEGG   Nicotiana sylvestris (wood tobacco): 104242675
Entry
104242675         CDS       T05026                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:nsy03009]
    104242675
Ribosome biogenesis [BR:nsy03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    104242675
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_EML Beta-prop_TEP1_2nd EIF3I NBCH_WD40 WDR55 Beta-prop_TEP1_C Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_Vps41 ANAPC4_WD40 Beta-prop_DCAF4 Beta-prop_IP5PC_F Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_IFT140_1st WDR54 Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_BBS7 Beta-prop_IFT122_1st Beta-prop_DCAF12 Beta-prop_LRRK2 Beta-prop_SPT8 PEP5_VPS11_N DUF4987 Beta-prop_WDR19_2nd VPS8_N PROPPIN
Other DBs
NCBI-GeneID: 104242675
NCBI-ProteinID: XP_009796052
UniProt: A0A1U7XVM8
LinkDB
Position
4:159054699..159060190
AA seq 449 aa
MTELELVIASSPTDAGIGCWDLHTGAEHLRYRSCSSPSHGLVCVGGRFLASSQLCATKSS
SGSILYWSWNKPQVEVKSFPAESISPLVCNNEGTYMAGGGASGDIYLWQVATGKLLKKWH
AHYRAVTCLKFNDDQSLLISGSEDGSVRVWSLIMVFDDLLREKARQPYEYSFSEHSLKVT
DVVTGYGGANAIVVSASEDRTCKVWSLSRGKLLRNIVFPSVIDAIALDPGEDVFYAGGRD
GKIYIAALNAVADPNSNYGLHILGFLSEQSKAITCLALTTDGVLLISGSEDGMVRVWNTK
DHNIARIFRHAKGPVNNIVVVRQPSLLSPRGSVNSQGPSVKRHGVSLPPPLEKYANSADD
NDYVAVIGPRVNPDRSVEASYISVQTLNNQILELQRQGSSAAAQMEIEKLKLDRSRSIQM
IQQWEKKYQNLHEFCVTELLDGEPAGNTA
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgacggagctggaattggtaatcgcgtcgtcgccgaccgatgccggtatcggctgttgg
gacctccatactggcgccgagcaccttcgttatcggtcttgctcctccccctcccacggc
cttgtctgtgtcggcggccgctttctcgcctcctctcaactctgtgctaccaaatcgtcg
tcaggctctatcctttactggtcctggaacaagcctcaagttgaagttaaaagctttcca
gcggaatctataagtccacttgtttgcaacaatgagggaacttatatggccggaggaggt
gcatccggtgatatatacttgtggcaggttgcgactggtaaactacttaagaagtggcat
gctcactatagggcagttacttgcttgaaattcaatgatgatcaatcacttctgatttct
ggttcagaggatggatctgttcgagtttggtctcttataatggtatttgatgatttgttg
agggagaaagcaagacagccttacgagtatagtttctctgagcattctttgaaggtgact
gatgttgtgactgggtatggcggagctaatgcaattgttgtatctgcttcagaagataga
acatgcaaggtatggagcttgtcgagaggaaaattgttgagaaacattgtgtttccatca
gtaattgatgctattgcattggaccctggtgaagatgtcttctatgctggtggtagagat
gggaaaatatacattgctgcactaaatgctgttgctgaccccaacagtaattacggattg
catattcttggttttttgtctgagcaaagtaaggctattacgtgcttagcattaactacg
gacggggtcttgctaatttctggatcagaggatggcatggttcgggtgtggaacactaaa
gaccataacatcgcccgaatttttaggcatgcaaaaggcccagttaacaatattgttgtt
gttagacaaccatctctcctgagtcccagaggatctgtgaattcccaagggccgtccgta
aagagacatggggtatcattaccacccccattggaaaagtatgctaactcagcagatgat
aatgattatgtggcagtaattggcccccgggtcaatcctgatagatctgttgaagcttca
tatatcagtgttcagacactaaataatcaaatcttagagcttcagagacaagggtcttct
gctgctgctcaaatggagatcgaaaagctaaaactcgaccgcagcaggtccatacaaatg
attcagcaatgggaaaagaagtatcaaaatctacatgagttttgtgtaaccgagctattg
gatggggaaccagctggaaatactgcgtga

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