KEGG   Nicotiana sylvestris (wood tobacco): 104242976
Entry
104242976         CDS       T05026                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03030  DNA replication
nsy03410  Base excision repair
nsy03420  Nucleotide excision repair
nsy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104242976
   03410 Base excision repair
    104242976
   03420 Nucleotide excision repair
    104242976
   03430 Mismatch repair
    104242976
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nsy03032]
    104242976
   03036 Chromosome and associated proteins [BR:nsy03036]
    104242976
   03400 DNA repair and recombination proteins [BR:nsy03400]
    104242976
DNA replication proteins [BR:nsy03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104242976
  DNA Replication Termination Factors
   ELG1-RFC complex
    104242976
Chromosome and associated proteins [BR:nsy03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    104242976
DNA repair and recombination proteins [BR:nsy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104242976
  Check point factors
   HRAD17(Rad24)-RFC complex
    104242976
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_11 AAA_16 Mg_chelatase nSTAND3 AAA_14 AAA_assoc_2 AAA_5 ResIII SLFN-g3_helicase AAA_2 AAA_24 PhoH AAA_28 AAA_7 AAA_18 AAA_19 AAA_30 NPHP3_N DUF3853 AAA_25 RNA_helicase Parvo_NS1 DNAX_ATPase_lid IstB_IS21 bpMoxR TIP49 VP2_lagovir Cdc6_lid DUF815 ATPase_2 NB-ARC
Other DBs
NCBI-GeneID: 104242976
NCBI-ProteinID: XP_009796390
UniProt: A0A1U7YC75
LinkDB
Position
4:100960083..100968582
AA seq 341 aa
MAPVVQSSQPWVEKYRPRQVKDVAHQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPEMYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSSRQGGYPCPPFKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMGS
RILHICREEGLSLDSEALSTLSSISQGDLRRAITYLQSAARLFGSSISARVLISVSGVIP
NEVTQAIFSACRSGNFDLANKEVDNVIAEGYPVSQMLSQLYDIVIDADDISDEQKARICK
KFAEADKCLVDGADEYLQLLDVASTTMQALTNMPQDMACES
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggcgccagttgtgcaaagctctcagccatgggtcgagaaatatcgaccgaggcaagtg
aaggacgtagcacaccaggatgaggtcgttcgagtcctcaccaacactctcgagacctct
aattgcccacatatgttgttttatggccctcctggaactgggaaaacgacgactgctctt
gccattgcccatcagcttttcggacccgagatgtataagtcgagggtattggagctaaat
gctagtgatgaccgtggtatcaatgtagtccgcacaaaaattaagaactttgctgctgtt
gctgtaggttctagtcggcaaggtggttatccctgtccaccttttaagatcataatcctt
gatgaagcagattcaatgactgaagatgctcaaaatgccttgcgacgcactatggagaca
tattcaaaagttacaagattcttcttcatttgcaattacatcagcaggatcatagagcca
ctcgcttccagatgtgcgaagtttagattcaagccgcttacagaagaaataatgggcagc
cgaatattgcatatttgtagagaggaaggtcttagtctagattcagaggctctttcgact
ctcagttccatttctcaaggtgatctacgaagggctataacatacttacaaagtgctgct
cggttatttggatcttccatatcggcaagggtcctaattagtgtgtctggggtcatccca
aatgaagttacccaggccatattctcagcttgcagaagtggcaattttgacttggcaaac
aaagaagtggacaatgtcattgcagaaggatatcctgtttctcagatgctgtctcagctg
tatgatatagtaattgatgcggacgacatttctgatgagcagaaagcaagaatatgcaag
aaatttgctgaagcagacaagtgtcttgttgatggagcagatgagtatttgcaacttctg
gatgttgcaagcaccacaatgcaagcacttaccaacatgccacaggacatggcatgtgaa
agttag

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