Nicotiana sylvestris (wood tobacco): 104242976
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Entry
104242976 CDS
T05026
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03030
DNA replication
nsy03410
Base excision repair
nsy03420
Nucleotide excision repair
nsy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104242976
03410 Base excision repair
104242976
03420 Nucleotide excision repair
104242976
03430 Mismatch repair
104242976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nsy03032
]
104242976
03036 Chromosome and associated proteins [BR:
nsy03036
]
104242976
03400 DNA repair and recombination proteins [BR:
nsy03400
]
104242976
DNA replication proteins [BR:
nsy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
104242976
DNA Replication Termination Factors
ELG1-RFC complex
104242976
Chromosome and associated proteins [BR:
nsy03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
104242976
DNA repair and recombination proteins [BR:
nsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
104242976
Check point factors
HRAD17(Rad24)-RFC complex
104242976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
AAA_11
AAA_16
Mg_chelatase
nSTAND3
AAA_14
AAA_assoc_2
AAA_5
ResIII
SLFN-g3_helicase
AAA_2
AAA_24
PhoH
AAA_28
AAA_7
AAA_18
AAA_19
AAA_30
NPHP3_N
DUF3853
AAA_25
RNA_helicase
Parvo_NS1
DNAX_ATPase_lid
IstB_IS21
bpMoxR
TIP49
VP2_lagovir
Cdc6_lid
DUF815
ATPase_2
NB-ARC
Motif
Other DBs
NCBI-GeneID:
104242976
NCBI-ProteinID:
XP_009796390
UniProt:
A0A1U7YC75
LinkDB
All DBs
Position
4:100960083..100968582
Genome browser
AA seq
341 aa
AA seq
DB search
MAPVVQSSQPWVEKYRPRQVKDVAHQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPEMYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSSRQGGYPCPPFKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMGS
RILHICREEGLSLDSEALSTLSSISQGDLRRAITYLQSAARLFGSSISARVLISVSGVIP
NEVTQAIFSACRSGNFDLANKEVDNVIAEGYPVSQMLSQLYDIVIDADDISDEQKARICK
KFAEADKCLVDGADEYLQLLDVASTTMQALTNMPQDMACES
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggcgccagttgtgcaaagctctcagccatgggtcgagaaatatcgaccgaggcaagtg
aaggacgtagcacaccaggatgaggtcgttcgagtcctcaccaacactctcgagacctct
aattgcccacatatgttgttttatggccctcctggaactgggaaaacgacgactgctctt
gccattgcccatcagcttttcggacccgagatgtataagtcgagggtattggagctaaat
gctagtgatgaccgtggtatcaatgtagtccgcacaaaaattaagaactttgctgctgtt
gctgtaggttctagtcggcaaggtggttatccctgtccaccttttaagatcataatcctt
gatgaagcagattcaatgactgaagatgctcaaaatgccttgcgacgcactatggagaca
tattcaaaagttacaagattcttcttcatttgcaattacatcagcaggatcatagagcca
ctcgcttccagatgtgcgaagtttagattcaagccgcttacagaagaaataatgggcagc
cgaatattgcatatttgtagagaggaaggtcttagtctagattcagaggctctttcgact
ctcagttccatttctcaaggtgatctacgaagggctataacatacttacaaagtgctgct
cggttatttggatcttccatatcggcaagggtcctaattagtgtgtctggggtcatccca
aatgaagttacccaggccatattctcagcttgcagaagtggcaattttgacttggcaaac
aaagaagtggacaatgtcattgcagaaggatatcctgtttctcagatgctgtctcagctg
tatgatatagtaattgatgcggacgacatttctgatgagcagaaagcaagaatatgcaag
aaatttgctgaagcagacaagtgtcttgttgatggagcagatgagtatttgcaacttctg
gatgttgcaagcaccacaatgcaagcacttaccaacatgccacaggacatggcatgtgaa
agttag
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