Nicotiana sylvestris (wood tobacco): 104243664
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Entry
104243664 CDS
T05026
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104243664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104243664
03012 Translation factors [BR:
nsy03012
]
104243664
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104243664
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104243664
Translation factors [BR:
nsy03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104243664
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
NACHT
T2SSE
AAA_30
AAA_16
ATPase
Dicer_dimer
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104243664
NCBI-ProteinID:
XP_009797190
UniProt:
A0A1U7YEG9
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All DBs
Position
3:complement(206831936..206844227)
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AA seq
1180 aa
AA seq
DB search
MPMPYSNLIQNCLKVRLKATQFLTTMSSTTTTSLQFCFHFNTAPLLHCPSQIRFICSAKG
SSNSSVVLRRKRNGSSSSSFSFPYLYQQNLGYGRFAYDEYESESESDRETESSKQLCDGT
LHNIEEWRWKLNMLMRKKDDQEVISREKKDRRDFEHISALATRMGLHCRQYEKAVVFSKV
PLPNYRPDLDAKRPQREVVLPYGLQNRVDDLLKAHLSKKSGNKENFAHNASPNDKEFYEN
EKPFARNVVAEQILRRRSLEMRNRQEDWKGSPEGQKMQEIRRNLPAYKERETLLRAISEN
QVVVVSGETGCGKTTQLPQYILEAEIEAARGATCNIICTQPRRISAMAVSERVAAERGES
LGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLGGVTHVIVDEIHERGMNEDFL
LIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRSHFLENILEITR
YRLTPYNQIDNYGQDKMWKMQKQTDRKRKTQIASAVEESLEAADFGQFNPRTRDSLSCWN
PDSIGFNLIEHVLCHICKNERPGAVLVFMTGWDDINALKDQLQAHPLLGDPSRVLLLACH
GSMASAEQKLIFDKPEDGIRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPC
LLPSWISKASARQRRGRAGRVQPGECYHLYPRCVFEAFADYQLPELLRTPLQSLCLQIKS
LQLGSISEFLSKALQPPEPLSVQNAVEFLKTIGALDENENLTVLGQHLSMLPVEPKLGKM
IILGAVFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDFSDHLALVRAYDG
WRNAERQQSGYEYCWKNFLSAQTLKAMDSLRKQFLHLLKEIGLVDSFQSCNAWSNDEHLV
RAIICGGLFPGICSVVNKERSISLKTMEDGGVLLYSNSVNAQELQIPYPWLVFNEKVKVN
AVFLRDSTAVSDSVLLLFGGSIFGRALDGYLMMLGGYLEFFMSPSLANTYLSLKRELNEL
VHKKLLDRNFDVGSHGELLEAVRLLVSEDQCEGKFVFGRKPSPKKSTKELQKSISSTEGT
GGENPKSHLQTLLARAGHQSPNYKTTQLKNNKFRSTVIFNGLNFVGQPCGSKKDAEKDAA
AEALQWLTGETQSSSKAVEHMSALLKKSKSKKQLHSTKWR
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgcccatgccttactctaaccttattcaaaactgcctcaaggtgaggctcaaagccacc
caattcctcaccactatgtcttccactaccaccacttctctacaattttgtttccacttt
aacacagcccctcttcttcactgcccgtcacaaattagattcatttgctccgccaagggc
tcttctaattcgtctgttgtattaaggcggaaaagaaatggttcatcatcttcttctttt
tcttttccgtatctttatcagcagaatttagggtatggtcgttttgcttatgatgagtat
gagtctgagtccgagtctgatcgtgaaactgagtcgtctaagcaactgtgtgatggaacc
cttcataatattgaagaatggaggtggaagctaaacatgttaatgcgcaaaaaagatgac
caagaagtgatctcaagggagaaaaaggaccgtcgggattttgagcatatatcagctctg
gcaactagaatgggtttgcattgccgccagtatgaaaaagcagttgtgtttagcaaagtc
ccattgccgaattataggccggatttggatgctaagcgtccacagagagaggtagtattg
ccttatggattacaaaacagggtagacgatcttcttaaagcacatctttctaaaaagtcc
ggaaacaaggaaaactttgcacataatgcttctcccaatgataaagagttttatgagaat
gagaagccatttgcacgaaatgttgttgcagagcaaattctcaggcgaaggagcttggag
atgcgtaacagacaagaagattggaagggatctccagaaggccagaagatgcaagaaatt
cgaagaaatctcccagcatataaagagagagagacattgcttagagctatttctgagaat
caggtggtggtcgtgtctggggaaactggatgtggtaagactacccaattgcctcagtac
attttagaagctgagattgaagctgctcgtggagctacttgtaatattatttgtactcaa
ccaaggcgaatatctgctatggctgtgtctgaaagagttgctgcagagcgtggggagagt
ctgggagaatctgtgggctacaaggttcggcttgagggcatgaaagggagggatacacgc
ctcttattttgcaccactggcattcttctaaggagattactggttgatagaaatttggga
ggtgtcactcacgttattgtagatgagattcatgaacggggaatgaatgaagatttccta
ttgattgtccttaaagatctccttccccgtcgaccggaattgaggctgatcttgatgagt
gctactcttaacgctgagctcttctcttcctattttggcggcgctccaatgatccatatt
cctggttttacttatccagtccgaagtcattttctggaaaatattttggaaataactaga
tatcggttaactccatataatcaaattgataattatggtcaagacaagatgtggaaaatg
cagaagcagactgataggaagaggaagactcaaattgcttcagctgttgaggaatcacta
gaagcagctgattttgggcagtttaatcctcgtactcgggattcactatcctgttggaat
cctgattcaataggtttcaacctaattgagcatgtgctttgccacatatgtaaaaacgaa
aggccaggtgctgtgttggttttcatgacaggttgggatgacattaatgctttgaaggat
cagctgcaggctcatcctctattgggagatccaagcagagtattgctgcttgcatgccat
ggttccatggccagtgcggagcagaaattgatttttgataagccagaagatggaataagg
aaaattgtattagctaccaatatggctgaaacaagtatcaccatcaatgatgtggttttt
gtggtcgactgtggaaaggcaaaagagacatcttatgatgcactcaacaacactccatgt
ttgcttccttcttggatttcaaaagcttctgctcgtcaaagaagaggaagagctggccgt
gttcaacctggggagtgttatcatctctatcctagatgtgtatttgaagcttttgcagat
tatcaactgccggagcttctgagaacaccattacaatccctatgtttgcagattaaaagc
ttacaacttggaagtatttcagaatttctatctaaggcattgcagccaccagaaccacta
tctgttcaaaatgctgttgagtttctgaagacaataggggctctagatgagaatgaaaat
ctgacagtacttggacaacacttatcaatgcttccagttgaaccaaaactgggaaaaatg
ataatattaggtgcagtattcaactgcctggatccaattatgacagttgttgctggttta
agtgttagagacccatttttaatgccatttgacaaaaaagatctggctgagtctgccaaa
gcccagttttctgctcgtgacttcagtgatcatcttgctcttgttcgggcttatgatggc
tggagaaacgctgaaaggcagcaatctggttatgagtactgttggaaaaatttcctttct
gcgcaaactctcaaagcgatggactcccttcgaaagcaatttttgcatctgcttaaggaa
attggtctagttgatagctttcagagttgtaatgcctggagtaatgatgaacatcttgtt
cgagcaattatatgtggcgggttattccctggcatatgctctgttgtgaacaaggagagg
tcaatctcattgaaaacaatggaggatggtggagtccttttgtactctaattctgttaat
gcccaagagctgcaaatcccatatccatggcttgtcttcaatgaaaaagttaaagtgaat
gcagtattcctgcgtgattctactgctgtatctgattctgtcctactcttgtttggtgga
agcatttttggacgagctctagatggatacttgatgatgcttggagggtacttggagttt
ttcatgagcccctcactggcaaatacttatttaagcttgaagagggagcttaatgaactt
gtccacaagaaacttttggaccgtaattttgatgtaggcagtcatggtgagctattagaa
gctgttagattgctggtgtcggaggatcaatgtgaaggtaagtttgtctttggtcgtaaa
ccgtccccaaagaagtccacaaaggagttgcaaaaaagcatcagttcaacagagggcact
ggtggtgaaaatccaaagtctcatctccagacattgcttgctcgggctggtcaccaatca
cccaattacaagactactcaactaaaaaataataagttccgctccactgtaatattcaat
gggttgaactttgttggtcagccttgcggtagtaagaaggacgctgaaaaagatgcagct
gctgaagctctgcagtggttgactggtgagacacagtcgtcttctaaggctgttgaacac
atgtcagcacttttgaagaaaagcaagagtaaaaagcaacttcatagtacgaaatggagg
taa
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