Nicotiana sylvestris (wood tobacco): 104243777
Help
Entry
104243777 CDS
T05026
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104243777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsy03021
]
104243777
03041 Spliceosome [BR:
nsy03041
]
104243777
03036 Chromosome and associated proteins [BR:
nsy03036
]
104243777
Transcription machinery [BR:
nsy03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
104243777
Spliceosome [BR:
nsy03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104243777
Complex B
104243777
Complex C
U2 SnRNP specific factors
104243777
Chromosome and associated proteins [BR:
nsy03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
104243777
TFTC complex
104243777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
104243777
NCBI-ProteinID:
XP_009797333
UniProt:
A0A1U7Y2G3
LinkDB
All DBs
Position
4:13369574..13376232
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQKPTGILCAINGSFSGGKVQEIAVARGKVLDLLRPDDNGKLQTLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
GIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITFSICGVDCGFDNPI
FAAIELDYAEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRVDLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLDHDNDRVKELKIKYFDTIPVSSSLCVLKSGFLFAASEFGNHALYQFQAI
GDDPDVEASSSTLMETEEGFQPVFFQPRKLKNLVRIDQIESLMPIMDMKIVNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSLQSVSSPPESLLFLEVQASIGGEDGADHPASLFL
NAGLQNGVLFRTVVDMITGQLSDARSRFLGLRAPKLFSIVVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAVPLRYTP
RRFVLQPKRKMVIMIESDQGAYTAEEREAAKKECFETAGNGENGNAEQVENGEDEDGNDP
LSDEQYGYPKSESGRWVSCIRVLDPRSTQTTCLLELQDNEAAFSICTVNFHDKEHGALLA
VGTAKGLQFWPKKSFEAAYIHIYKFKEDGKVLELLHKTQVDGVPLALCQFQGRLLAGVGS
VLRLYDLGKKRLLRKCENKLFPNSITSIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHVDFDTVAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHVGDVVSCLQRASLIPGGGECVIYGTVMGSVGAMLPFSSRDDVDFFSHLE
MHLRQEFPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtctcactctccaaaaacccaccggcatactctgcgccatcaacggc
agcttttccggtggcaaagtacaagaaatcgccgtcgcccggggaaaagtcctcgacctc
ctacgccccgacgataacggtaagctccaaaccttattatccgtcgaaatcttcggcgct
atacgctccttagctcaatttcgattaaccggtgcacaaaaagattatattgtagtcggg
tcggattcgggtcggatagtgatattagagtataataaagagaagaatgtttttgataaa
attcatcaggagacttttgggaaatcgggttgtagacggatagttccgggtcagtatttg
ggtattgacccgaaaggtagggctgttatgattggtgcttgtgagaaacagaagcttgtg
tatgttttgaatagggatactgctgctaggttaactatttcatcgcctttagaagctcat
aagagccacacgattacgttctcgatttgtggtgttgattgtggatttgataacccgata
tttgctgcgatcgagttggattacgcggaggcagatcaggatcctactggccaggccgca
aatgaggctcagaagcatttgacattttatgaattagatttagggcttaatcacgtgtcg
aggaagtggagtgaacaggttgataatggtgctaatttgctcgtgaccgtacctggtggt
ggggatggtccgagtggtgtgcttgtttgcgcggagaattttgtgatatataagaatcag
ggacaccctgatgttagggctgttattcccagaagggtggatttgccagcggaacgtggg
gttttgattgtttcagctgctatgcataagcagaagtcaatgtttttctttcttttgcaa
actgaatatggagatatctttaaggtgacattggatcacgacaatgacagggttaaggag
ttaaagatcaagtattttgatacaattccagtcagttcttcgctgtgtgtcttgaagtca
gggttcctctttgctgcgtcagagtttgggaatcatgcattgtatcagtttcaggcgata
ggagatgatcctgatgtcgaagcttcatcatcgacgttaatggaaactgaagaaggtttt
cagcctgtatttttccagccaagaaagctaaaaaatcttgttaggatcgatcagattgag
agtttgatgccaatcatggacatgaaaatagtaaatctttttgaggaagaaactccacaa
atattttcactttgtgggaggggtccccggtcttcgttgcgcatacttaggccaggttta
gctgttagtgaaatggctgtgtcacagcttcctggtgttcctagtgctgtctggactgtg
aaaaagaatgtcaatgatgagtttgatgcgtacattgttgtatcttttgcgaatgcaact
ctcgtgctttctattggtgagacagttgaagaagttagtgacagtgggtttcttgatact
actccatctcttgctgtttcattgattggtgatgattcattgatgcaagttcatcccagt
ggaataaggcatatcagagaagatggccgtattaatgaatggagaactcctggaaagaga
actattgtcaaggtcggatctaataggcttcaagtggtaattgcactaagtggaggggag
cttatatattttgaagtggatatgactggccagctgatggaagtcgagaagcatgagatg
tcaggtgatgtagcttgtctggacattgcccctgttcctgagggaagacaaaggtcccgt
ttccttgcagttggatcatatgataacactattcgtatcttgtcattggatcctgatgac
tgtatgcaggttctgagcctgcaaagtgtatcttcaccgccagagtctctcctttttctt
gaagttcaggcctctattggtggagaagatggtgcagatcaccctgccagcctttttctt
aatgctggtttacaaaatggggttttattcaggactgtggtggatatgataactgggcag
ctttcagatgcacgttcacgtttcttggggcttagagcccctaagctcttttccattgtt
gtgagaggacgacgtgctatgctttgcttgtcaagtagaccgtggctaggttatatacac
caagggcattttcttttgacgcctttatcatatgagactcttgaatttgcagcctcattt
tcatcggatcaatgtgcagaaggtgtagtagcggttgctggggatgcgttgagggtcttc
acgatagagagattgggcgagactttcaatgaaacagctgtacctttaaggtatacacca
agaaggtttgttcttcaacctaaacggaagatggtgataatgatagagagtgaccaggga
gcatatactgcggaagagcgtgaagctgccaaaaaggagtgcttcgagacagctgggaat
ggtgaaaatggaaatgcagaacaagtggagaatggtgaagatgaagatggtaatgatcca
ctatctgatgaacagtatggatatcccaagtcggagtcaggaaggtgggtttcctgcatc
agagtccttgacccaaggtcaacacaaaccacttgtctgctagagcttcaggataatgag
gctgcgtttagcatatgcactgttaatttccatgacaaggagcatggagctctgttagct
gttggtactgccaagggccttcagttttggcccaaaaaatcgtttgaagcagcatacatt
catatatacaaatttaaagaagatgggaaggtccttgagcttttgcacaagacacaggta
gatggtgtgcctcttgcattatgtcagttccaaggaagactactagctggtgtggggtct
gtccttaggttgtatgatttggggaagaaaagactgctcagaaaatgtgagaacaagctt
ttccccaactcaatcacatctatccatacctatcgtgatcggatttatgtgggtgacatg
caagagtcattccactactgtaagtatagacgtgatgaaaatcaactgtacatatttgct
gatgacacggttccgagatggctaaccgcagcacagcatgtagattttgacacagtggca
ggagctgacaagtttgggaatatctactttgtgcgattacctcaggatgtctcagatgag
attgaagaagaccctactggtggaaaaataaaatgggagcaagggaagctgaatggagcc
ccaaacaaggttgaggaaatagtgcagtttcatgttggtgatgtggtctcttgcttgcaa
agagcatcacttattccaggagggggtgaatgtgtaatttacgggactgtgatggggagc
gtcggggcaatgcttccatttagctcgagggatgatgttgacttcttctctcatttggag
atgcatttgaggcaggagttcccacctttatgtggcagggatcacatggcctacagatct
gcctacttcccggttaaggatgtgatagatggagacttgtgcgaacagttcccaaccttg
ccaatggatatgcagcgcaaaattgcagatgagttggacagaacaccaggcgagattttg
aaaaagcttgaagaaataagaaacaaaattatttga
DBGET
integrated database retrieval system
