Nicotiana sylvestris (wood tobacco): 104244668
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Entry
104244668 CDS
T05026
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03030
DNA replication
nsy03420
Nucleotide excision repair
nsy03430
Mismatch repair
nsy03440
Homologous recombination
nsy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104244668
03420 Nucleotide excision repair
104244668
03430 Mismatch repair
104244668
03440 Homologous recombination
104244668
03460 Fanconi anemia pathway
104244668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nsy03000
]
104244668
03032 DNA replication proteins [BR:
nsy03032
]
104244668
03400 DNA repair and recombination proteins [BR:
nsy03400
]
104244668
Transcription factors [BR:
nsy03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104244668
DNA replication proteins [BR:
nsy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104244668
DNA repair and recombination proteins [BR:
nsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104244668
MMR (mismatch excision repair)
104244668
DSBR (double strand breaks repair)
HR (homologous recombination)
104244668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
DUF223
TMEM219
Carboxyl_trans
Motif
Other DBs
NCBI-GeneID:
104244668
NCBI-ProteinID:
XP_009798443
UniProt:
A0A1U7Y5N6
LinkDB
All DBs
Position
5:62975199..62978751
Genome browser
AA seq
638 aa
AA seq
DB search
MPVNLTANAIPAIIAGDVNSKPVVQVLDIKLIGAAADRYGLLISDSESSQQAMLAAQLND
RVKTGRVRKTSVIQLIEYICTTVKNRKIIVVINMETIIPECEIIGNPKVLVESNFGAQKA
ISNGISGSAIFNNGNLSAQRSGQTSFANSNNLSSLNSGNSMQSYPPAIQPAYQPPPNYKS
HGTIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNSRGDGKVFSFDLLDSDG
GEIRVTCFNAVVDRFYDKIEAGKVYMISKGSLKPAQKNFNHLKNEWEIFLEITSTVDLCP
DEDNTIPRQQFSFRPISDIESAESNSIIDVIGIVIAVNPSVLILRKNGMETQRRILNLKD
QSGRSVELTLWGDFCNREGQKLQEMAEAGFSPVLAVKAAKVSDFTGKSIGTISSTQLFIG
PDFAEAQTLREWFDQGGKDVASQSISRENMPVGSKSEIRKTVSRIKDEGLGRSDKPDWIT
VKATITFIKTDSFYYTACPLMIGDRQCNKKVTRSGNSRWQCDRCNQEFEECDYRYLLQAQ
IQDHTGLTWVTAFQESGEEILSCPAKELHMMNEEADDTRFSEIIRKCLFTQFLFRLKIKE
ELYGDEQKVKITVIKAEKVKHSAESRYLLDLISKFRSS
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgaacttgactgcaaacgcgatcccggcgataatcgccggcgacgtgaactca
aagccagtggttcaggtattggacatcaagctaattggcgccgcagcggatcggtacgga
ctcctaatctcagattctgagtcgagtcagcaggctatgctggctgctcagcttaatgac
cgagtcaaaactggccgcgttcgcaaaacctccgtcattcagttgattgagtacatctgt
accactgttaaaaatcgcaaaattattgttgtcatcaacatggaaactattataccagaa
tgtgaaataattgggaatcctaaagtgcttgtagaatctaattttggagctcagaaagct
atatctaatggcatttctgggtctgcaatctttaacaatggtaacttgagtgctcaaaga
tctggccaaacaagctttgctaacagcaacaatttgagctccctaaattcaggtaatagc
atgcagagctacccacctgcaattcaacccgcatatcaacctcctccaaattacaaaagc
catgggacaataatgaagaatgaagcacctgcccgcattattccaatagctgctttgaac
ccctatcagggtcggtgggctattaaggctagagtgactgcaaagggggatctacgtcgc
tataataattccagaggagatggaaaggtcttctcatttgatctccttgactctgatggg
ggtgaaatacgtgtcacttgctttaatgcggttgttgatcgcttttatgacaaaattgaa
gctggaaaagtgtacatgatatcaaaaggcagcttgaaacctgctcaaaagaacttcaac
catctgaagaatgaatgggaaatattcttggagataacttcaactgtagatctctgtcca
gatgaagataacactataccaagacagcagttctcatttagacctattagtgacattgaa
agtgcagaaagcaattcaatcatagatgtgattggaattgtaatagctgtcaatccttct
gttctgatcctgagaaagaatggaatggaaactcaaagaagaatcttgaatctaaaggat
cagtctgggcgaagtgttgagctgacgctatggggagacttctgcaacagggaaggtcaa
aagctgcaagaaatggcagaagctgggttttcccctgttttagctgtcaaagctgcaaaa
gttagtgacttcactgggaaatccattggaaccatttcttccactcaactgttcataggt
ccagattttgcagaggctcagactctaagagaatggtttgatcagggaggaaaagatgtt
gcttctcaatctatatctagggaaaacatgcctgtaggatcaaaaagtgagatacgcaag
accgtgtctcggatcaaggatgaagggcttggtaggtcagataaaccagactggattaca
gttaaggcaactataacattcatcaaaaccgacagcttctattacactgcttgccctctg
atgattggagatagacaatgtaataagaaagttaccaggtcaggaaactcgagatggcaa
tgtgataggtgcaatcaagagtttgaggaatgtgattacagataccttcttcaagctcaa
attcaagatcatactgggttgacatgggtgacagctttccaggaatctggggaagagatt
ttgagctgtcccgcaaaggagctacacatgatgaatgaagaggctgatgataccagattt
tctgaaattattagaaaatgtctctttacacaatttctattcaggcttaaaatcaaagag
gaactttatggtgatgagcagaaggtgaagattacagttatcaaggcagagaaagtgaaa
cattctgcagaaagcagatatctccttgatttaatttcaaaattccgttcttcatga
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