Nicotiana sylvestris (wood tobacco): 104244948
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Entry
104244948 CDS
T05026
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104244948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsy03400
]
104244948
DNA repair and recombination proteins [BR:
nsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104244948
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
ATG17_like
Motif
Other DBs
NCBI-GeneID:
104244948
NCBI-ProteinID:
XP_009798771
UniProt:
A0A1U7YA03
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Position
6:197684569..197694656
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AA seq
939 aa
AA seq
DB search
MNENLEEQSKLPELKLDAKQAQGFLSFFKTLPKDPRAVRLFDRRDYYTAHGDDATFIAKT
YYHTTTALRQLGNGADALSSISVSRNMFETIARDILLERMDRTLELYEGSGSNWRLVKSG
TPGNLGSFEDILFANNEMQDSPVIAALAPNFGQNGCEVGLGYVDITKRVLGLTEFLDDSH
FTNLESALVALGCRECLVPAETGKSSEYRPMFDAISRCGVMVTERKKTEFKGRDLVQDLG
RLVKGSVEPVRDLVSGFECASGALGCILSYAELLADESNYGNYTVKQYSLSSYMRLDSAA
MRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVEEINCRLDLVQSF
VEDAALRQDLRQHLKRISDIERLTHNLERKRASLVHVVKLYQSSIRVPYIKSVLERHDGQ
FATLIRERYIDSLEKWSDDNHLNKFIGLVETSVDLDQLENGEYMISSAYDPNLSALKDEQ
ETLERQIHNLHKQTANDLDLPVDKSLKLDKETQFGHVFRITKKEEPKVRKQLNSHYIVLE
TRKDGVKFTNTKLKKLGDQFHKIVEEYKSCQKELVARVVQTAASFSEVFEGIAGVLSELD
VLLSFADLAASCPTPYTRPNISPPDTGDIILEGCRHPCVEAQDWVNFIPNDCRLVRGESW
FQIITGPNMGGKSTYIRQVGVNVLMAQVGSFVPCDNATISIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATH
FHELTALANKNGNNGHKQNAGIANFHVFAHIDPSNRKLTMLYKVQPGACDQSFGIHVAEF
ANFPPSVVALAREKASELEDFSPIAIIPNDIKEAASKRKREFDPHDVSRGTARARQFLQD
FSQLPLDKMDPSEVRQQLSKMKTDLERDAVDSHWLQQFF
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaaatttggaggaacagagcaagcttcctgagcttaaacttgatgctaagcaa
gctcaaggatttctctcatttttcaaaaccctacccaaggaccctagggcagttcgcctc
tttgatcgtcgggactattatactgctcatggagatgatgcaactttcattgcaaagaca
tattaccacacaacaactgctttacgacagttgggtaatggagctgatgccctttccagt
attagtgtgagtagaaacatgtttgaaacaatagctcgtgacattctcttggagagaatg
gaccgtactcttgaactatatgagggcagtggttcaaactggagactggtaaaaagtgga
accccagggaatcttggaagttttgaggatattctgtttgctaataatgaaatgcaagat
tctccggtgattgctgctcttgctccaaacttcggtcagaatggatgtgaagttggctta
ggctatgttgatattacaaagagagtccttggtttaacagaatttctagatgatagccac
ttcacgaatttggagtctgctttggttgctcttggttgcagagaatgtcttgtaccagcg
gagactggcaaatccagtgaatacaggcctatgtttgatgcaatatctagatgcggcgtg
atggtaactgaaagaaagaaaaccgaatttaaagggagagatttggtacaggatcttggt
aggctcgtcaagggttcagtagaacctgttcgagatttggtctctggttttgaatgtgca
tcaggagctttgggctgcatactttcttatgcagaactacttgcggatgagagcaattat
ggaaactatacagtcaaacaatacagcctcagtagttacatgagattagattctgctgct
atgagagcactgaatgttatggagagcaaatcagatgctaataaaaattttagtttgttc
ggtctgatgaatagaacatgtactgctggaatgggtaaaaggttattgcacatgtggctc
aaacagcctttactagatgtagaagagattaactgtaggctggatttagttcaatcattc
gtggaggatgctgcgcttcgccaagacttgaggcagcatctaaaaagaatttcagatatc
gagcggctgacacacaatcttgagaggaaaagagccagtttagtgcacgttgtaaaactc
tatcagtcaagcatcagagtaccatatatcaaaagtgttttggaacggcatgatgggcaa
tttgcaacactcattagggaaagatatattgattctctggagaaatggagtgatgataat
cacctgaataagttcataggtcttgtggaaacttctgttgaccttgatcaacttgagaat
ggagaatacatgatttcttctgcatatgacccaaatttatctgctctgaaggatgagcaa
gagacattggagcgacaaattcataatttgcacaaacaaactgccaatgatcttgatcta
cctgttgataagtcgcttaaactagataaagaaacacaatttggacacgtcttcagaatt
accaagaaagaagaaccaaaagttaggaagcagctaaattctcattacattgttctcgaa
acacgtaaggatggggtaaagttcaccaatacaaaactcaaaaaactaggagatcagttc
cacaagattgtagaggagtacaagagctgtcagaaagaattggtagctcgtgtagttcaa
acagctgcgagtttctccgaggtgtttgaaggtatagctggtgtactttctgagttggat
gtgctactgagttttgcggatttggctgccagttgcccaactccttacacaagaccaaat
atcagtccaccagatacaggagatattatacttgaagggtgtaggcatccttgtgtggaa
gctcaagattgggttaacttcattcctaatgactgtagactagttaggggagagagttgg
tttcagattatcacaggccctaacatgggtggaaagtctacctacattcggcaggttggt
gtgaatgtcctgatggcccaagttggctcgtttgttccatgtgacaatgctaccatttct
attcgtgattgtatttttgctcgtgttggcgctggagattgccagctgagaggagtttct
acttttatgcaagagatgcttgagactgcgtcgatcttgaaaggagctactgatagatca
ttgattataattgatgagttgggccgtggtacatcaacctatgatggctttggtttagct
tgggctatttgtgagcacattgttgaagaaattaaggcaccaacattgtttgccactcac
tttcatgagctgactgcattggccaacaagaatggtaacaatggacataagcaaaatgct
gggatagcaaattttcatgtttttgcacacattgacccttctaatcgcaagctaactatg
ctttacaaggttcaaccaggtgcttgtgatcagagttttggtattcatgttgctgaattt
gcaaattttccaccgagtgttgtggccctggctagagaaaaggcatctgagttggaggat
ttctctcctattgccataattccaaatgacattaaagaggcagcttcaaaacggaagaga
gaatttgaccctcatgacgtgtctagaggtactgccagagctcggcaattcttacaggat
ttctctcagttgccactggataagatggatccaagcgaggtcaggcaacagttgagcaaa
atgaaaaccgacctggagagggatgcagttgactctcactggcttcagcaattcttttag
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