Nicotiana sylvestris (wood tobacco): 104245108
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Entry
104245108 CDS
T05026
Name
(RefSeq) zinc finger CCCH domain-containing protein 16 isoform X1
KO
K14321
nucleoporin-like protein 2
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104245108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104245108
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
104245108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_4
zf-CCCH_DUS3L
zf-CCCH_2
Torus
zf-CCCH_PARP12
DUF4726
Motif
Other DBs
NCBI-GeneID:
104245108
NCBI-ProteinID:
XP_009798981
UniProt:
A0A1U7YAL3
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Position
6:complement(14833751..14842035)
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AA seq
419 aa
AA seq
DB search
MPPRKEPCRNFLRGSCQYGERCKFLHVAQQQPKPNPFGFGSQPSNFQSTNLQQTKSNPYG
FGVQNNFQPRGSNDLGPKQSQYKPFENKWTRSTSTNSSSSRQSDNQPVAPNHTCTDSDSC
RRQIMEDFNNEKPMWLLTCYGHRKNGPCDVIGDVSYDELRAAAYDDAKRGQSLMSIVERE
RNMLNSKAAEFENLLRNYVAPSTSVPNAQSPFPGAAPNASLSAQSPFPVTTPNASLSAQS
PFPGAAPNASLSAQSSFPPSASSFSQLGALLNTGASAAPTNTFGQPSPLGNSVKTSSSSS
GANAFSFGNAGSGSFGFGSQVTSQSHQNPFTPSNISASSERNPFSTSITSQHFPNPSGGQ
LPTTPQGNFSASVAVSPVNINLTNAASTEEFSGDNSIWAKKEWKIGEIPEEAPPDKYIF
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcccccaaggaaagaaccctgcagaaatttcttgcgtggcagctgtcaatatggggaa
cgttgtaaatttcttcatgttgcgcaacaacagccgaagccaaatccatttgggtttggc
agccagccctctaattttcagagtacgaatctgcagcagacaaagtccaacccttatggt
ttcggtgttcagaacaacttccagcctagagggtccaacgatctggggcccaaacagagt
caatataagcctttcgaaaataagtggactcgttctacgagtaccaatagttcttcatcg
cggcaatctgacaatcagcctgtagcacctaatcacacctgcacagattctgactcatgc
agacgccagattatggaagattttaataatgagaagccaatgtggttgcttacatgctat
ggtcatcgaaaaaacggtccatgtgatgttatcggtgatgttagctatgatgagctacga
gcagcagcatatgatgatgcaaaacgtggacagagcttgatgtctattgttgagagagag
aggaacatgcttaattctaaagcagctgaatttgaaaatctattacggaactatgtagct
ccatcaacttctgttcctaatgctcaaagtccttttcctggtgccgcgccaaatgcctcg
ttgagtgctcaaagtccttttcccgttacaacgccgaatgcctcattgagtgctcaaagt
ccttttccgggtgccgcaccaaatgcatcattgagtgctcaaagcagttttcctccttca
gcctcaagttttagtcagttgggagctttactgaatacaggggcatctgctgcaccaact
aatacatttgggcaacccagtccccttgggaactctgttaagacatcatcaagttcttct
ggggcgaatgctttttcatttgggaatgcaggatcaggttcctttggcttcggaagccaa
gttacttcccagtcacatcaaaaccctttcactcccagcaatatttcagcaagttccgag
aggaatccattttctacctcaattacctcgcaacattttcctaatccctctggcggccaa
ctacctactactcctcaggggaatttttctgcttcagttgcggtgtcccctgtcaacatc
aacttgacgaatgctgcatcgaccgaggaattcagtggggataacagcatttgggcaaag
aaggaatggaaaattggggagattccagaagaagcacccccagacaaatatatcttttag
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