Nicotiana sylvestris (wood tobacco): 104245772
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Entry
104245772 CDS
T05026
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104245772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nsy03041
]
104245772
03009 Ribosome biogenesis [BR:
nsy03009
]
104245772
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104245772
Spliceosome [BR:
nsy03041
]
Complex A
U1 snRNP components
U1 related factors
104245772
Complex B
104245772
Ribosome biogenesis [BR:
nsy03009
]
Eukaryotic type
Pre-60S particles
Helicases
104245772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
104245772
NCBI-ProteinID:
XP_009799735
UniProt:
A0A1U7Y6I0
LinkDB
All DBs
Position
2:5749401..5761586
Genome browser
AA seq
749 aa
AA seq
DB search
MAATATASSAGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPVAPSHGGTA
PQHKSSVSVSSSVQRPSQGQPPDRDDDNEYNRGSNGGWSKLSSGEDIKTARGSELSRDET
SVPKSNSAPAAASNISPDAYRRQHEISVTGGDVPPPFTSFEATGFPSELLREIHQAGFPA
PSPIQAQSWPIALQGRDIVAVAKTGSGKTLGFLLPGFIHLKRRRNNPQSGPTILVLSPTR
ELATQIQDEAVKFGRSSKISCTCLYGGAPKGPQLRDLDRGVDIVVATPGRLNDILEMRRI
RLDQISYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMFTATWPKEVRKIAADLLVNP
VQVNIGNVDELVANKSITQYVEVLSYMEKQRRLDQILRSQEPGSKIIIFCATKKMCDQLA
RNLTRPFGAAAIHGDKSQGERDHVLSQFRTGKSPVLVATDVAARGLDVKDIRVVINFDFP
TGVEDYVHRIGRTGRAGATGEAYTFFCDQDAKHASDLIKILEGANQQVPTELRDMASRGG
GMGGARRQWSSGPGGREGGRGGRYDSGYGGRDGGRGGWGAPSSERSGRDYESDSRDSDRY
GHGSRDTDAPPSFHARSFHETMMQASQRRGRSRSRSPNKGSGWGDTKSRERSRSRSAERF
DQAPRQAPVGRSFHESMMGRSGSSPVASKHRSPSYSDNRSPSAGDCQKGWEKEKSPPRWQ
GDGKFGNEPRAYNGEEEEGMIPEDVETRA
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggctgctactgcaactgcatcttctgctggtccgcgttacgcaccagaggaccccacc
ctcccaaaaccttggaaaggcctggttgatggtaagactggatacctctatttttggaat
ccagagaccaatgttacccaatatgagaggcctgttgctccttcccatgggggtactgct
ccacaacataaatcatcggtatctgtaagttcatcagttcaaaggccttctcaaggtcaa
cctcctgaccgtgatgatgacaatgaatacaacagaggtagcaatggtggctggagcaag
ctttcttctggtgaggatattaagactgcaagaggaagtgagctttcccgcgatgaaaca
tctgtacctaaaagcaatagtgctccagctgctgctagtaacatatctccagacgcctat
cggcgtcagcatgaaatttctgttacaggaggtgatgtgcccccacctttcacatcattt
gaagcgactgggtttccttcggagcttttgagggagatacatcaagctgggtttcctgct
ccttccccgatacaggcacagtcctggcccattgcacttcagggccgtgacatagtagct
gttgcaaagactggatctgggaaaactttgggtttcttgcttcctggctttattcatcta
aaacgacgtcgcaataatcctcaatcaggccctactattttggttctgtcgcctacaaga
gagttagctacacagatacaagacgaagctgtgaagtttggtagatcgtcaaagatatct
tgcacgtgtctatatggaggcgccccaaaaggccctcagctacgagatctggatagggga
gtagatattgttgtcgctacccctggtcgtttgaatgatattttggagatgagaagaatt
aggctggatcaaatttcttacttggtgttagatgaagcggatcgtatgctggacatggga
tttgaacctcagataaggaagattgtaaaagaggtgccaacacgacggcagacactgatg
ttcacggcgacatggccaaaggaggtccgtaaaattgcagctgatctattggttaatcca
gttcaggttaacattgggaatgttgacgaacttgttgcaaacaagtctataacacagtac
gttgaagtcttgtcatatatggagaaacaaaggcggctagaccagatcttgagatcccaa
gaaccaggatcaaaaatcataatcttctgtgcaacaaagaaaatgtgtgaccaacttgct
cgcaatcttacacgcccatttggagctgctgcaattcatggtgataaatctcagggtgag
agggatcatgtattgagccagttccgcacgggtaaatcccccgttcttgtcgctacagat
gttgctgcccggggcttggatgtcaaagatatcagggtggtgatcaactttgactttcct
accggagtagaggattatgtacacagaataggaagaactggtcgggctggtgcgactggt
gaggcctacacatttttttgtgaccaggatgctaagcatgcttcagatcttattaaaatt
ttagaaggagcaaatcagcaagtgcctactgaactacgtgatatggcttctcgaggtggt
ggtatgggaggggctaggcgtcaatggagttctggcccaggtggacgtgaaggaggacgt
gggggacgttatgattccggctatggtggaagagatggaggaaggggtggttggggagca
ccatcatcggaaagaagtggacgtgattatgagtcggattcacgtgacagtgatagatat
ggtcatggctctcgtgataccgacgctccaccgagcttccacgctcgtagcttccatgaa
acaatgatgcaggcttcacagagacgtggtcgaagtcggagcagaagcccgaataaaggt
tcaggatggggtgatacaaaaagcagggaacgcagtcgcagccgtagtgctgaaagattt
gatcaggctcctcgtcaagccccagtgggacgcagttttcatgaaagcatgatggggcgc
agtggatcatccccagtggcctcaaaacaccgatcaccctcttactctgataatcgatct
ccatcagctggtgattgccaaaagggctgggaaaaagaaaaatctccacctagatggcaa
ggtgatgggaaatttggcaatgaacctcgtgcttacaatggggaggaggaagaaggtatg
attcctgaagacgtcgaaacgagggcctaa
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