Nicotiana sylvestris (wood tobacco): 104246117
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Entry
104246117 CDS
T05026
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104246117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nsy03041
]
104246117
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104246117
Spliceosome [BR:
nsy03041
]
Complex C
Other components
Step II factors
104246117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
GAP1-M
AAA_29
Motif
Other DBs
NCBI-GeneID:
104246117
NCBI-ProteinID:
XP_070016767
LinkDB
All DBs
Position
10:154183846..154192775
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AA seq
714 aa
AA seq
DB search
MPSMSANNFSRNSHQHHPNQTKGDFFARKQKIEQQRKNLPIAAVERRLVEEVRNNDTLII
VGETGSGKTTQIPQYLFKGGFCRDGGIIGITQPRRVAAITVAKRVSEECGVPLGQKVGYA
IRFEDVTSGLTKIKYMTDGLLLREALLDPYLSKYSVIIVDEAHERTIHTDVLLGLLKNVQ
KARSKCISEAVNTDHNNSNNGHASEGRIDNQNDGILKPCQAKKYHPLKLIIMSASLDARV
FSEYFGGARAVHVQGRQFPVDIFYTHKPETDCIDAALITIFQIHLEEGPGDILVFLTGQE
EIESVERLIHERLRQLPECNRKLLTFPIYSSLPSEKQMKVFMPSPAGYRKVILATNIAET
SVTIPGIKYVVDPGLVKARTYDPKMGVDSLIIVTTSKAQALQRSGRAGREGPGKCYRLYQ
ESFFEKLTDSTLPEIKRCDLSNVVLQLKALGIDDVINFDFIEKPDRTAIVNSLWSLYLLG
AVTEENKLSDVGYQMAKLPLDPVYSKALIVASQFGCLKEMLICVAMLSVESIFYAPREKL
EESRNALKSFASPDGDHLTLLNVYRAADEFFQKNKTVNSEEKAEKNLRKWCKDNYINSRS
LKHARDIHSQILRNVEQMGLRVTSCEDDMLLFRRCLAASFFLKAAMKQPDGVYRVTLSGL
IVQIHPSSVLFRAKPECIIFNELVHTNHSYVRNVSRIDYLWLIELAPHLYALQD
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaatgagtgctaataatttttcaagaaacagtcatcagcatcaccctaaccaa
acaaaaggggatttttttgccaggaagcaaaagattgagcaacagagaaaaaatttacca
attgctgcagttgaaaggagactagtggaggaggtgcggaacaatgacactctgataatc
gttggagaaactggaagtggaaagacaactcaaatacctcagtatctttttaaaggggga
ttttgccgtgatggtggtatcattgggataactcaacctagacgtgtggctgctattact
gttgctaaacgtgtttctgaagaatgtggagttccgctgggacaaaaggttggatatgct
attagatttgaagatgtaacttctggcctaacaaagatcaaatatatgacagatggtttg
cttctaagggaagctttattggatccatacctctccaagtattctgttattattgttgat
gaggcgcacgagcgaactatacacactgatgtattgcttggcttgttaaagaatgtacag
aaagcaaggtcaaagtgtattagcgaagcagtaaatactgatcataataactctaataac
gggcatgcctcggagggaaggattgacaatcagaatgatggtattttgaagccatgtcaa
gcgaaaaagtatcacccattgaaattgatcatcatgtcagccagtctggatgcacgagtt
ttctcagagtactttggtggtgcaagagctgttcatgttcagggacggcagtttcctgtc
gatatattctacacccataagccagagacagattgcatagatgcagctttgattactata
tttcagatacatctagaggagggtcctggtgatatacttgtattcctcactggccaagaa
gagattgaatccgttgagaggcttatccatgaacgcctccgacagttacctgaatgcaat
aggaagctcttaacttttcccatatactcgtcgcttccctctgagaagcaaatgaaggtt
ttcatgccttcaccagctggatatcgtaaggtgatactggcaacaaatattgctgagaca
tcagtgacaatacctggaattaagtatgttgttgatcctggactggtgaaagcacgaact
tatgatcctaagatgggagttgattcgttgatcattgtcacaacgtctaaagctcaagct
ctgcaaaggagtggacgtgcaggacgtgaaggacctgggaaatgctatcgcctctatcaa
gaaagtttctttgagaaactcacagattctacattacctgagattaagagatgtgatctt
tcgaatgtcgtattgcagctcaaagctctaggcattgatgatgtcattaattttgacttc
atcgaaaaaccagacaggactgccatagtcaactcactgtggtctctctacttgttgggt
gctgtaacagaagagaataaactttcagatgttggataccaaatggccaagctaccactt
gatccagtctattctaaggctctcattgttgctagccaattcggctgcttgaaagaaatg
ttgatctgcgttgcgatgctctcagtggaatctatattctatgctccacgtgaaaagttg
gaagagtcacgaaatgcgttgaaaagctttgcaagtccagatggggatcatttgactttg
cttaatgtataccgcgctgctgatgagttctttcagaagaacaagacggtaaatagtgaa
gaaaaggctgaaaagaatcttagaaaatggtgcaaggataattatataaacagccgctct
ctaaaacacgctcgtgatatccacagtcaaattctgaggaatgtagaacaaatgggtctt
cgtgtcacgtcttgtgaagacgatatgcttctcttccgcagatgtcttgcagcctcgttt
ttccttaaagcagctatgaagcagcctgatggtgtatacagggtcacattaagtggtttg
atagtgcaaatacacccgtcttctgtcttgttccgagcaaagccagagtgtataattttt
aatgaattagtccatactaatcatagttatgttcgcaatgtttcaagaatcgattacttg
tggctaattgagctggctccacacttgtatgccttgcaagactaa
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