Nicotiana sylvestris (wood tobacco): 104246186
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Entry
104246186 CDS
T05026
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104246186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nsy03041
]
104246186
Spliceosome [BR:
nsy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
104246186
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
104246186
NCBI-ProteinID:
XP_009800257
UniProt:
A0A1U7Y802
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Position
5:26892991..26898612
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AA seq
854 aa
AA seq
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MEREKSNRRERASRDDDDDRRHHHRDRSKHHHRDDENRHRSDDRRGRDRERERHREKSHE
SEVVREKSYDREDSVERRHSHRRKDDREKREKSYEREDSVERRNAHKRKDRGEESVDKSN
GGDEKRARVSEDKKEERRERRRFDDKVKKEEEEDVEIDEERKGKRFEMRIVKEEPKPEPN
DNNGHGVGSIDNGVTMGPYNAALRTSPDKSSTRIDPPATKVSSISTTNENKGVNINRSHA
VPGKSSTDGAASDAGKSATLSLDAKGNAKALIQRQKELAAKLKKIPLLNKGADFTREGSS
QIGRKDSLYAASTDAGILPPPVASSNSGILPTPSSAPSTSTIAVASANTPPSGLPQVAGL
TVTAQNYDKVKRAHELFAKMGFRQDPEFPPLINMFPGQMPPEVTIQPKPARAPVLRLDAL
GREIDEQGNVVNVPKPSSTLKVNINKQKKESFQILKPELDVDPDKNPHFDPRMGIDKNKI
LRPKRMSFQFVEEGKWSHDAELIKLKQSQYGESRAKELRAKQMQLAKAKAEPVINPNLIE
VAERVITKEKPKEPIPDVEWWDAPLLRSGTYGGMVDGDLTDDMLKMEKITIYVEHPRPIE
PPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKERQEMIRQGLLEPPKPKVKMSNLMKVL
GSEATQDPTKLEMEIRSAAAEREQAHIDRNIARKLTPDERREKKERKLFDDPNIAPETIV
SIYRVNDLSHPQTRFKVDVNAQENRMTGCAVISEGISVVVVEGGKKSIKRYGKLMLRRID
WAAAVKKEDDEDEDDEDKPLNKCVLVWQGTVAKSSFHRFFVHECRTEAAARKVFADAGVP
HYWDLAVNFKDDEF
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggagagagaaaaatcgaataggagagaacgagcatccagagacgacgacgacgaccgc
cgccatcatcatcgcgaccgttcgaagcaccaccatcgcgacgatgagaaccgacaccga
tccgatgatcgaagaggtcgcgatcgcgaacgcgaaaggcatcgcgagaaatcacacgaa
tcggaagttgtcagagaaaaatcttacgatagagaggattccgtggagagaaggcattcg
cataggaggaaagacgatagagagaaacgcgagaaatcgtatgagagagaggattcagtg
gagagaaggaatgcacataagaggaaagatagaggagaagagagtgtggacaagagcaat
gggggagatgagaagagagctagggtttcagaggataagaaggaggagagaagagagagg
aggagatttgatgataaagtgaagaaggaggaggaagaggatgtggaaattgacgaggaa
aggaaggggaaaagatttgaaatgagaattgtgaaggaagaaccgaaacccgagcccaat
gataataatggtcatggtgttggttccattgataatggcgtgacaatgggaccatacaat
gcagcattgaggacctcccctgataaatcttcgactcgtattgatcctcctgctaccaag
gtatcttcaatttctacaacaaatgaaaataagggagttaatattaacagatctcatgcg
gttcctgggaaatctagtacagatggggcagcttctgatgctggcaagagtgccacctta
tcccttgatgccaaaggaaatgcaaaggctctcatacaaaggcagaaggagctggcagca
aagcttaagaaaattcctttgctaaacaagggtgccgactttacgagagagggaagttca
cagattggtcgcaaggatagtctttatgccgcttcaacagatgcggggatattgccccca
ccggttgcatcttcaaattctgggatattacccactccaagttcagcacctagcacatcg
actatagctgtggcttctgcaaatacgccacccagtggcttgcctcaggttgcggggctc
acagtcacagcacagaactatgataaagtgaagcgtgcacatgagctttttgctaagatg
ggattccggcaggacccggagtttccccccctcattaacatgtttcctgggcaaatgcct
ccagaggttaccattcagccaaaacccgctagagcccctgttcttcgtttggatgcatta
ggcagggaaatcgatgaacagggaaatgtggttaacgtgcctaagccatctagcaccctt
aaggtgaatatcaacaagcagaaaaaagaaagcttccaaattctcaaacctgaacttgat
gttgatcctgataaaaatcctcattttgatccgaggatggggattgacaagaacaaaatt
ttgaggccaaagaggatgtcatttcagtttgtggaggaaggtaaatggtcccatgatgca
gaattaattaagttaaagcaaagccaatatggtgaatcacgagccaaagagttgagggca
aagcaaatgcaattggcaaaggcaaaagcagagcctgtcataaatccaaatcttattgag
gtggcagagagggttatcaccaaggaaaaaccaaaggaaccaatccctgatgttgagtgg
tgggatgctcctctgttacgatctggtacttatggtggtatggtcgatggtgacttaact
gatgatatgttgaagatggagaagatcactatttatgttgaacacccccgccctattgag
cctcctgctgaacctgctccacctcctccacaaccattgaagctgaccaagaaggagcag
aagaaactacgtacccagcgtcgactggctagggagaaagaaaggcaggaaatgatacgt
cagggcctgttagaaccaccgaaacctaaagttaaaatgagcaatcttatgaaagttctt
ggctcagaagccactcaggatcccacaaagcttgaaatggagatcagaagtgctgctgct
gagcgagaacaggctcatatagacagaaatattgctcgaaagctcactcctgatgaacgt
cgtgagaagaaagaaagaaaactatttgatgatccaaatatcgcaccggagacgatagtt
tcgatatacagagttaatgacctttcacaccctcaaactcgcttcaaggttgatgttaat
gctcaggagaatcgcatgactgggtgtgcggttatctcggaaggtataagtgtggtggta
gttgaaggtggtaaaaagtccatcaagcggtatgggaaacttatgcttaggcgaatagac
tgggctgctgctgttaagaaagaagatgatgaagacgaagatgatgaagataagcctctc
aacaagtgcgtgttagtctggcaagggactgttgctaaatcaagcttccataggtttttt
gttcacgagtgcaggactgaggctgctgctcgtaaggtctttgctgatgctggggttcct
cattactgggatcttgctgtaaacttcaaagatgatgaattttag
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