Nicotiana sylvestris (wood tobacco): 104246392
Help
Entry
104246392 CDS
T05026
Name
(RefSeq) protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsy03021
]
104246392
Transcription machinery [BR:
nsy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
104246392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_12
TPR_14
TPR_16
TPR_19
TPR_17
TPR_6
TPR_CcmH_CycH
TPR_11
TPR_9
TPR_7
ANAPC3
TPR_10
ARM_TT21_5th
ARM_TT21_C
ARM_TT21_2nd
RPN7
TPR_Slam
Fis1_TPR_C
NatA_aux_su
HAT_PRP39_C
SPOB_a
DUF7017
Motif
Other DBs
NCBI-GeneID:
104246392
NCBI-ProteinID:
XP_009800504
UniProt:
A0A1U7YMP3
LinkDB
All DBs
Position
7:6455264..6475499
Genome browser
AA seq
1095 aa
AA seq
DB search
MASVYIPVQNSEEEVRVSLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFR
QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFIMATQYYNKA
SRIDMHEPSTWVGKGQLLLAKGDIEQAFAAFKIVLDGDRDNVPALLGQACVQFSRGRYSD
SLELYKRALQVYPECPAAVRLGIGLCRYKLGQVEKAKQAFRRVLELDPENVEALVALAIL
DLQNNDASGIRRGMEKMQRAFETYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTTH
GPTKSHSYYNLARSYHSKGDYEKAGMYYMASVKESNKPHEFVLPYYGLGQVQLKLGDLRS
SQANFEKVLEVYPESYETVKALAHIYVQLGQTEKAQEYLKKATKIDPRDPQAFLDIGELL
ISNDPAAALEAFKTARNLLKKSNEEVPIELLNNIGVLHFERGEFELAAQSFKEALGDGIW
LKFLDAKGQSDDPTSEGHLYSNGEARSDMFKSAQYPINASESVQQYKDFQLFHRLEEQGI
SVELPWNKVSTLFNMARLLEQLHDTETASIFYRLILFKYPGYVDAYLRLAAIAKARNNVQ
LSIELIGDALKVDEKCPDALLMLGDLELKNDDWVKAKETFRAAKDATDGNDSYATLCLGN
WNYFAAIRNEKRAPKLEATHLEKAKELYTKVLFQHNANLYAANGAGVVLAEKGQFDISKD
LFTQVQEAASGNVFVQMPDVWINLAHVHFAQGNFALAVKMYENCLRKFYHNTDSQVLLYL
ARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDSGVALQKFSASTLQKTKRTVDEVRATV
AELKNAVRLFSLLSAASNLHVHGFDEKKIETHVGYCKHLLEAAKVHCEAAEREDQQNKQR
LELARQVILAEENRRKAEEQRKYQLERRKQEDELKQVMQQEQHLERIKEQWKSSTPASKR
KDRPQTEDDEGGHGEKRRKKGGKRRKRDKKSHYESEEAEAEMDDQEEMDDGDRHRNYEEP
YYPTNDHDEQAEDNPQDLLAAAGLEDSDAEDDTAAPSANASRRRQALSESDEDEPLPRQG
SDGEGGGDATVDDDE
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgtgtacattccagtacaaaattccgaggaggaagttagggtatcattggac
caactcccaagggatgcttctgacattcttgacattctcaaggctgaacaagctcctctt
gatctctggcttattatcgctagggaatattttaaacaagggaaaatcgatcagtttcga
caaatattggaagaaggttctagtccagagattgatgaatattatgcagacgtgaggtat
gagaggatcgccattctaaatgcattgggtgcatattatagttatcttgggaagattgag
acgaaacaaagagaaaaagaggagcactttattatggcaactcaatattataataaagca
tctagaattgacatgcacgagccctctacttgggttggaaaaggtcagcttttacttgcc
aagggcgatatagagcaggcatttgctgctttcaagattgtacttgatggagatcgtgat
aatgttcctgctctcctgggtcaggcctgtgttcagtttagccgtggacgatattctgat
tcactggagctatataagagggccttgcaagtttatccagaatgtcctgctgcggtaagg
ctcggaataggtctctgtcgatacaagttgggccaagtggaaaaggcaaagcaggctttt
cgtcgtgtattggagttagacccagagaatgtggaggctctggtggcactagcaattctg
gatttgcaaaacaatgatgcgtctggtattaggagaggaatggaaaagatgcaaagagct
ttcgagacatatccctactgtgcaatggctctaaattatctggccaatcattttttcttc
actggtcagcattttctagtggagcaattgactgagactgcacttgctgtaaccacacat
gggccaactaagtctcattcgtactacaatttggcacgctcataccacagcaagggtgac
tatgagaaagctggaatgtactacatggcatctgtaaaagaaagcaataagccgcatgaa
tttgtattaccctattacggattgggacaagtacagctgaagttgggagatcttcggagt
tcgcaggcaaactttgagaaagttttggaggtttaccctgaaagttatgagacagtgaaa
gctcttgcacacatttatgtgcagcttggccagacagagaaagctcaggaatacttgaag
aaagccactaaaattgatcctcgtgatccccaggcctttttggatataggagaactgtta
atctcaaatgatcctgctgctgctttagaagcctttaaaacagcgcggaatttacttaag
aagtcaaatgaagaagtaccaattgagttactcaacaacattggcgtcctccattttgaa
aggggagaatttgagcttgctgcacaaagtttcaaggaagccctaggtgatggtatatgg
cttaaattccttgatgctaaaggacagtctgatgatccaacttctgaagggcatttatat
tccaatggtgaagcacgatctgatatgtttaaaagtgcacaatatccaatcaatgccagt
gaatctgttcagcaatacaaggacttccagctgtttcatagacttgaggaacaaggaatt
tctgtggaacttccttggaataaagtttcaacactctttaacatggcaagattactggag
cagttgcatgacacagaaactgctagcatcttttaccgccttatcttatttaagtatcca
ggttatgtagatgcttatctgcggcttgctgccattgcaaaagctcgaaataacgtgcag
ctaagtattgagctgattggtgatgcactcaaggtggacgagaagtgtccagatgcactg
ctaatgcttggtgatttggaacttaagaatgatgattgggtcaaggcaaaagaaactttt
cgggctgctaaagatgcaactgatggaaatgattcttatgctactctttgtctgggaaat
tggaactacttcgcggcgattcggaatgagaaaagagctccaaagttggaagctactcat
ctagagaaggctaaagaactctatacaaaggttctctttcagcataatgcaaatctctat
gcagcaaatggtgctggtgttgttttggcagaaaaaggccaatttgacatttcaaaggat
cttttcacacaggttcaagaagctgccagtggaaatgtttttgtccaaatgcctgatgtg
tggattaatcttgcacatgttcactttgctcaagggaacttcgcattggctgtgaaaatg
tatgaaaattgtttgcggaaattttatcataataccgacagtcaagtgctcctctattta
gcaagaacacattatgaagctgaacagtggcaagattgtaaaaagactttattaagagcc
atccacttagcaccttcaaattatacattgagatttgacagtggagtagcactacagaaa
ttttcagcctcaacgttacaaaagactaagcggactgtggatgaggtgagagcaacggtt
gcagagctgaagaatgcagttcgcttattcagtctattgtctgcagcttcaaatcttcat
gttcatggatttgatgagaaaaaaattgaaactcatgttggatattgcaagcatttgctt
gaggctgcaaaagttcactgtgaggcagctgagcgtgaagatcaacagaataagcagaga
ctggaacttgctcgtcaggtcatattggctgaagaaaatcgtagaaaagctgaggagcag
agaaaatatcaattagagagaaggaaacaagaggatgaactcaagcaagtgatgcagcaa
gagcagcatttagagcgcattaaggaacaatggaagagtagtactcctgcctctaagcga
aaggacaggccccagactgaggatgacgagggcgggcatggtgagaagaggaggaagaaa
ggtgggaagcggagaaagagggacaagaaatctcattacgaatctgaggaagcagaagcg
gagatggatgatcaggaagaaatggatgatggtgaccgtcacagaaattatgaagaacct
tattatccaacaaatgatcatgatgagcaagcagaggataatccacaggatctacttgca
gcagccgggcttgaagattcggatgccgaggatgacactgctgcaccatcagcaaatgca
agtcggcgaaggcaggcattgtcagaatcagacgaggatgagccattgccgaggcaggga
agtgatggagaaggcggaggcgatgctactgttgatgatgatgagtga
DBGET
integrated database retrieval system
