KEGG   Nicotiana sylvestris (wood tobacco): 104246944
Entry
104246944         CDS       T05026                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03030  DNA replication
nsy03410  Base excision repair
nsy03420  Nucleotide excision repair
nsy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104246944
   03410 Base excision repair
    104246944
   03420 Nucleotide excision repair
    104246944
   03430 Mismatch repair
    104246944
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nsy03032]
    104246944
   03036 Chromosome and associated proteins [BR:nsy03036]
    104246944
   03400 DNA repair and recombination proteins [BR:nsy03400]
    104246944
DNA replication proteins [BR:nsy03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104246944
  DNA Replication Termination Factors
   ELG1-RFC complex
    104246944
Chromosome and associated proteins [BR:nsy03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    104246944
DNA repair and recombination proteins [BR:nsy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104246944
  Check point factors
   HRAD17(Rad24)-RFC complex
    104246944
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_lid_RFC1 RCF1-5-like_lid AAA_16 AAA_22 DUF815 AAA_assoc_2 AAA_11 AAA_5 AAA_14 ATPase_2 RuvB_N AAA_24 DNAX_ATPase_lid AAA_30 AAA_7 nSTAND_NTPase5 ResIII AAA_3 AAA_19 nSTAND3 bpMoxR AAA_28 SLFN-g3_helicase AAA_2 Mg_chelatase AAA_18 RNA_helicase DO-GTPase1 AAA_25 ABC_tran nSTAND6
Other DBs
NCBI-GeneID: 104246944
NCBI-ProteinID: XP_009801157
UniProt: A0A1U7YAL0
LinkDB
Position
6:153822782..153827041
AA seq 360 aa
MAEPISLMDIDDDKIDTKPNKGKNIIFSSSTADPKAVPWVEKFRPQSLSDVAAHRDIVET
IDRLASGNRLPHLLLYGPPGTGKTSTILALARKLYGSQMHNMVLELNASDDRGIDVVRQQ
IQDFASTQSISFGAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTRNTRFALICNNVNKV
IPALQSRCTRFRFAPLDAVHVSERLKHVIEAERLDVPEGGLKALVRLCNGDMRKALNILQ
STHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEPFALSCKRISEIKTRKGLALVDIV
REVTMFVFKIKMPPNVRVQLINEMANIEYRLTFGCNDKLQLGSLIAAFTRARSALVAAAK
NT seq 1083 nt   +upstreamnt  +downstreamnt
atggcggagccaatctcgttaatggatatcgacgatgacaaaatcgacacgaaaccaaac
aagggtaaaaacataatcttttcaagctccacagctgaccccaaagcagttccttgggtc
gaaaagtttcgtcctcagtccctctctgacgtcgctgctcatcgcgatatagttgaaacc
attgataggctagcgagtggtaataggttgccgcatttgctgctatatggacctcctgga
actggaaaaacatctacaattctcgcgcttgcacggaagctatatgggtctcagatgcac
aatatggttttggagctgaatgcatctgatgatcgtgggattgacgtggtgcgccagcag
attcaggattttgctagtactcagagcatctcctttggtgctaagtcagcagtgaagcta
gtactattggatgaagcagatgcaatgacaaaggatgcacagtttgccctgcgtcgagtt
attgagaaatatacaagaaacactaggtttgcactgatatgcaacaatgtcaataaggtt
attcctgccctacaatcacgatgtacacggtttaggtttgctccacttgatgcagttcat
gtatctgagcggctgaaacatgttattgaggctgaaaggcttgatgtccctgagggtggt
ttaaaggcacttgtacgactgtgcaatggtgatatgcgaaaagctttaaacattctgcag
tcaacgcacatggcttctcagcagattacagaagaagctgtgtatctgtgcactggaaac
ccattgcccaaggacattgagcagatctcttactggcttctgaatgaaccctttgctctc
agttgcaaacgaatatcagaaatcaagacaagaaaaggattggctctggtggatatcgtg
agagaagtaaccatgtttgtcttcaaaattaaaatgccgccaaatgttcgggttcagctg
atcaatgagatggctaatattgagtataggttgacttttggttgcaatgataagttgcag
cttggatcactgattgctgcttttacacgagcaagatctgcacttgttgcagctgcgaag
taa

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