KEGG   Nicotiana sylvestris (wood tobacco): 104247393
Entry
104247393         CDS       T05026                                 
Name
(RefSeq) THO complex subunit 4A
  KO
K12881  THO complex subunit 4
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03013  Nucleocytoplasmic transport
nsy03015  mRNA surveillance pathway
nsy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104247393
  09122 Translation
   03013 Nucleocytoplasmic transport
    104247393
   03015 mRNA surveillance pathway
    104247393
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nsy03019]
    104247393
   03041 Spliceosome [BR:nsy03041]
    104247393
Messenger RNA biogenesis [BR:nsy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104247393
    TREX complex
     104247393
Spliceosome [BR:nsy03041]
 Complex C
  Other components
   EJC/TREX
    104247393
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    104247393
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3 DUF5320 Btz
Other DBs
NCBI-GeneID: 104247393
NCBI-ProteinID: XP_009801704
UniProt: A0A1U7YR50
LinkDB
Position
11:147928970..147932643
AA seq 252 aa
MAEAALNMSLDDLIKKNKTGTGGKPRGRGRGGASGPGPARRFPNRSANRAAPYSTAKAPE
AAWNHDMFAAADQAFPFGQAGVGQAASSISTGTKLYISNLDYGVSNEDIKELFSEAGDLK
RYAIHYDRSGRSKGTAEVVFSRRQDALAAVKRYSNVQLDGKPMKIEIVGTNIATPTAPAF
NGAFGFGDANGGPRSGQARGGGFGRSRGGRGRGRGFRGGSRGRGRGDRGEKVSAEDLDAD
LMKYHSEAMQTN
NT seq 759 nt   +upstreamnt  +downstreamnt
atggcagaggcagctttgaatatgagcttagacgatctcatcaagaagaataaaaccggt
accggaggtaaacctcgcggcagaggtcgtgggggcgcctccggtcctggtcctgctcgc
cgattccccaatcgttcagctaaccgagctgcaccttattccaccgccaaggctcctgag
gcggcgtggaatcatgatatgttcgcggcggcagatcaagctttcccctttggacaagcc
ggtgttggtcaggcggcgtcttccatatcgactgggacaaagctctacatctccaatctt
gattacggcgtctccaatgaggatatcaaggagctcttctcagaagctggtgacctgaaa
cgctatgctatacattatgataggagcgggagatcgaagggaacggcagaggtggtcttc
tcgcgtagacaagatgcactagctgccgttaagaggtacagcaacgttcagcttgatggg
aagccaatgaagattgaaattgttgggaccaacattgccactcccactgcccctgctttc
aatggtgcttttggttttggagacgctaatggaggtcccagaagtggtcaagcaagaggt
ggtggctttgggaggtcacggggtggtagaggacgcggtcgcggatttcgaggaggcagc
aggggacggggaagaggagatcgtggagaaaaggtatctgcagaagatctagatgctgat
ctgatgaagtatcattcagaagcaatgcagacaaactga

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