Nicotiana sylvestris (wood tobacco): 104247727
Help
Entry
104247727 CDS
T05026
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104247727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nsy03041
]
104247727
03009 Ribosome biogenesis [BR:
nsy03009
]
104247727
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104247727
Spliceosome [BR:
nsy03041
]
Complex A
U1 snRNP components
U1 related factors
104247727
Complex B
104247727
Ribosome biogenesis [BR:
nsy03009
]
Eukaryotic type
Pre-60S particles
Helicases
104247727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
104247727
NCBI-ProteinID:
XP_009802114
UniProt:
A0A1U7YSB3
LinkDB
All DBs
Position
10:complement(30192836..30199139)
Genome browser
AA seq
501 aa
AA seq
DB search
MSRYDSRPADPGSYRDRRSDSGFSGGSSYRSSSSNRKDYEGKDSPRKVDLDGLTPFEKNF
YVESPFIAAMTESEVEEYRRQREITVEGREVPKPVKSFHDVGFPDYVIQEIEKAGFTEPT
PIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE
LAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNNTN
LRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLFNSY
KVVIGSADLKANHAIRQHVEIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQVTRL
LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKFVINYDFPG
SLEDYVHRIGRTGRAGASGTAYTYFTAANARFAKDLINILEEAGQKVSPELAKMGRGAPP
PPGLGGFRDLGRGYGGNRQWS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctatgatagccgtccggcggaccctggctcttaccgcgaccgtcgcagtgac
tcgggcttcagtgggggctcgagttatagatcatcgtcatcaaacaggaaagattacgag
ggtaaggattcgccacggaaggttgatttggatggattgactccattcgagaagaatttc
tatgttgaatcaccgttcatcgcggcaatgactgaaagtgaggtggaagagtatagacga
caacgggagatcactgttgagggccgtgaggtgcccaagcctgtaaagtcctttcatgat
gtaggatttccagattatgtcatccaagaaattgaaaaggctggcttcactgaacctaca
cctattcaagctcaaggttggcctatggccttgaagggccgtgatctcattggaatagca
gaaacagggtctgggaagacacttgcttatctgttgcccgcaattgtgcacgttaatgcc
cagccatttttagctcctggagatggtcctattgtcttagtgttagccccaactcgcgaa
ctagctgttcagattcaacaagaagccactaaatttggtgcatcatcacggattaagaat
acatgcatttatggtggggttccaaaggggccccaagttcgtgatcttcagaaaggtgtt
gaaattgttattgccacacctggaaggttgattgatatgctagaatctaataatacaaat
ttgcgaagggtgacatatctcgtgctggatgaggctgaccgcatgctagacatgggtttt
gaacctcaaatccgcaaaattgtttctcagatacgtccagatcgtcaaacgttgtattgg
agtgccacatggcccaaggaagttgagcagcttgcaaggcagttccttttcaactcatac
aaagttgttattggttcagctgacctgaaagctaatcatgctattcgccagcatgtggaa
attgtctcggagagccagaagtataataaattggtaaagttgctggaagatattatggat
ggtagtcggattttaatattcatggataccaaaaaggggtgtgaccaagtaactcggctg
ctccggatggatggttggcctgcactttctattcatggtgataagagtcaagcagaaaga
gattgggtcctttcagagttcaaggctggaaagtctcctataatgacagctacagatgtt
gctgctcgtggtctagatgtgaaggatgtaaaatttgtaatcaactatgattttcctgga
tcgctggaggactatgttcatcgcattggcagaacgggaagggctggtgcatcagggaca
gcatacacatactttaccgctgcgaatgctaggtttgccaaggaccttattaacattctt
gaggaggctggacagaaggtcagtcctgaactggcaaaaatgggacgtggtgctcctccc
cctccaggtcttgggggttttcgagaccttggaaggggttacggaggcaataggcaatgg
agctaa
DBGET
integrated database retrieval system
