Nicotiana sylvestris (wood tobacco): 104249289
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Entry
104249289 CDS
T05026
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03420
Nucleotide excision repair
nsy04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104249289
09124 Replication and repair
03420 Nucleotide excision repair
104249289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nsy04121
]
104249289
03400 DNA repair and recombination proteins [BR:
nsy03400
]
104249289
Ubiquitin system [BR:
nsy04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
104249289
DNA repair and recombination proteins [BR:
nsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
104249289
TCR (transcription coupled repair) factors
Cul4-CSA complex
104249289
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
104249289
NCBI-ProteinID:
XP_009803984
UniProt:
A0A1U7YXV1
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All DBs
Position
2:complement(178903469..178924619)
Genome browser
AA seq
1095 aa
AA seq
DB search
MSIWNYVVTAHKPTNATHSCVGNFTAPHELNLIIAKCTRIEIHLLTPQGLQCICLQPMLD
VPIYGRIATLELFRPHGETQDFLFIATERYKFCVLQWDAEASEVITRAMGDVSDRIGRPT
DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKP
TIVVLYQDNKDARHVKTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPPPLCGVLIIGEE
TIVYCSASAFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLQLLVITHEKEKVTGLKIE
LLGETSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDAKGSYVEVLERYVNLGPIVDFC
VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDT
FLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAIYNQLVQVTSNSVRLVSSI
SRDLKNEWFAPAGYSVNVATANATQVLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCL
DINPIGENPNYSQIAAVGMWTDISVRIYSLPDLNLITKEQLGGEIIPRSVLMCSFEGISY
LLCALGDGHLLNYVLSMSTGELTDRKKVSLGTQPITLRTFSSKDATHVFAASDRPTVIYS
SNKKLLYSNVNLKEVSHMCPFNVAAFPDSLAIAKEGELTIGTIDEIQKLHIRSIPLGEHA
RRISHQEQTRTFALCSVKYTQSNADDPEVHFVRLLDDQTFEFISTYPLDQFEYGCSILSC
SFSDDSNVYYCVGTAYVMPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK
LLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLI
FKHEEGAIEERARDYNANWMSAVEILDDDIYLGSENNFNLFTVRKNSEGATDEERSRLEV
VGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQ
TSLRKVIKGVGGLSHEQWRSFYNEKKTVEAKNFLDGDLIESFLDLSRSRMEDISKAMAVP
VEELMKRVEELTRLH
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgagtatatggaactatgtggttacggctcacaagccaacgaacgctacacattcctgt
gttggcaatttcaccgctcctcacgagctcaatcttatcattgcgaaatgtactcgaatc
gagattcatttactcactccccaaggcttacagtgtatttgtctgcagcctatgttagat
gtgccaatatatgggagaatcgcgacactcgagcttttccgtccccacggtgaaacacaa
gattttctcttcattgcgacggagcgatataaattctgtgtccttcaatgggatgctgag
gcatctgaagttatcacaagagcaatgggagatgtctcagatcgaataggccgtcccacc
gataacggtcagattggtataatcgacccagactgcagattgatcgggttgcatctttat
gatggactatttaaggttattccatttgataacaaaggccaactgaaggaagcctttaac
atcaggcttgaggagcttcaagttttggatattaaattcttatatggttgcccaaagcct
acaattgttgttctatatcaggataacaaggacgcccgacatgtcaaaacgtatgaggtg
tcgttgaaggataaagattttattgaagggccatgggctcagaataatctcgataatgga
gcttctttgctaataccagtacctccgccactgtgtggtgtactgattattggagaagaa
accatagtttactgtagcgcttcagcttttaaggctatcccaattagaccttccatcaca
agagcatatgggcgggttgatgctgatggttctcgatatttgcttggggatcacaatggg
cttcttcagctacttgtaatcactcatgaaaaggaaaaagttaccggactcaaaattgag
ctactgggagaaacttctattgcatcaaccatatcatacctagacaatgcttttgtcttc
attgggtcaagctatggagattcacagctcgtaaagctcaatctccagcccgatgccaaa
ggttcttatgtggaagttctagagagatatgtcaatttgggaccaattgtggacttctgt
gttgttgacctggagaggcaaggtcaaggtcaggtcgtgacttgctctggagcctataag
gatggctcacttcgtattgttcgaaatggaattggaataaatgaacaggcgtctgtggaa
ctacaagggatcaaaggaatgtggtctcttagatcagctactgatgatccatatgacaca
ttcttggttgttagcttcattagcgagacacgtgttttagctatgaaccttgaggatgag
ctggaagaaactgagatagaaggcttcaattctcaagtccagaccttgttttgtcatgat
gcgatatacaaccagcttgtacaggttacttctaactctgtaagattggtcagctctatc
tctagagatctgaaaaacgaatggtttgctccggccggctactcagtcaatgttgcaact
gctaatgccactcaggtactgttggcaactgggggtggccatctggtctacctagaaatt
ggtgatggggtgctaaatgaagtaaaatatgccaagttggattatgatatctcatgcctg
gacataaatccaattggtgagaatccaaactatagtcaaattgcagcagttggaatgtgg
acagacataagtgtcaggatatattcacttcccgacttgaatctcattacaaaggaacag
ctaggaggggagataattcctcgttcagttcttatgtgttccttcgaagggatatcttat
ctactatgtgctttgggagatggtcatctcttgaattatgtattgagcatgagtactggt
gagctgacagacaggaaaaaagtgtctcttggaacccagcccataacacttcgtacattc
tcatctaaagatgctacgcacgtctttgctgcctccgataggcccacagttatttacagc
agtaacaagaagctgctttatagcaatgtaaatctaaaagaagttagtcacatgtgccca
ttcaatgttgcagcttttccagacagcctcgcaattgcaaaagaaggagagttaacaatt
ggcactattgatgaaattcaaaagcttcacatccgttcaatacccctcggggagcatgca
cggcggatcagccatcaagagcagaccaggacatttgctctatgcagcgtcaagtatact
cagtcgaatgcagatgatcctgaagtgcattttgtccgcctgttagatgatcagacattt
gagttcatatcaacttacccccttgaccaatttgaatatggttgttccatacttagctgc
tccttttctgatgacagtaatgtgtattattgcgttggcactgcttatgtgatgccagag
gaaaatgaacctaccaagggccgaattttagtttttatagttgaagatggaaagctccaa
ctaattgcagagaaggaaactaagggagctgtatactctctaaatgccttcaatgggaaa
ctgcttgctgcaatcaatcagaagattcaattgtacaagtgggcctcgcgtgaagatggt
ggcagccgagaattgcagacagaatgtggacaccatggtcatatattggctctttatgtt
caaacacgtggggattttattgtcgttggtgatttgatgaagtccatttctctactgatt
ttcaagcacgaggagggtgctatagaggagcgagcccgggactataatgcaaattggatg
tcagctgtcgagattctcgacgatgacatttatcttggttcggagaacaactttaacctt
ttcacggtcaggaaaaatagtgagggtgctacagatgaagagcgcagccgtcttgaagtg
gttggtgaataccaccttggtgaatttgttaataggtttagacacggttcacttgtcatg
cgattgccagattcagatgttggccagatacctaccgttatatttggcacagtgaatggt
gttattggggtcattgcctcgcttcctcatgatcagtatttatttttggaaaagctgcag
acaagcttaaggaaagtgataaagggtgtaggcggactgagccatgagcagtggaggtcg
ttttacaatgagaagaaaactgtagaagctaaaaactttcttgacggagatttgattgaa
tcattcctagatcttagcaggagccggatggaagatatttctaaagcaatggcagttcct
gttgaggaactaatgaagagagtggaagagttgacaaggttgcattag
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