KEGG   Nicotiana sylvestris (wood tobacco): 104249367
Entry
104249367         CDS       T05026                                 
Name
(RefSeq) splicing factor U2af large subunit A-like isoform X2
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104249367
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:nsy03041]
    104249367
Spliceosome [BR:nsy03041]
 Complex A
  U2 snRNP components
   U2 related factors
    104249367
 Complex B
    104249367
SSDB
Motif
Pfam: RRM_1 RRM_MUD2_C RRM_7 RRM_occluded RRM_PARP14_3
Other DBs
NCBI-GeneID: 104249367
NCBI-ProteinID: XP_009804080
UniProt: A0A1U7YZD9
LinkDB
Position
6:11276456..11286208
AA seq 609 aa
MDSHENGRSQPTPSRTGGENEIAGVDNGEEEEHNLRRRRSSSKHSSHDYENERESSRSRD
RERDKGRDKDRDRSRDKERDRDREKDRDRRHRERSERRRTRDRDDDATISDEGPEGREYW
QKDYDRDRDERHRHRSKSYEREREEGHRHRSKSYDKDREERDRHRSKSYDKDREERRGHR
SHSRGKSGHRSRSRSRSRSRSKSKRISGFDMAPPTSALLPGAPAVTDAPAGQLPATAPAI
PGIFPNMFPLASAQLGAIPVMPVQAMTQQATRHARRVYVGGLPPSANEQSVATYFNHVMS
AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGTQVKVRRPTDYN
PSLAATLGPSQPNPNLNLAAVGLSPGSTGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP
LRGFNLVKDKETGNSKGYAFCVYSDVSVTDIACAALNGIKMGDKTLTVRRASQGTLQPKP
EQESILMHAQQQIALQRLMLQPGGPPTKVLCLTNVVSADELKDDEDYEDIVEDMRTECGK
FGNLVSLVIPRPRPDGEPTPGVGKVFLEYTDVEGSSRAQQGLNGRKFGGNPVVAVFYSEN
KFSEGDYEG
NT seq 1830 nt   +upstreamnt  +downstreamnt
atggactcccatgaaaatgggcgcagtcagcccacgcctagtcgtactggtggtgagaac
gaaatagccggtgtggataatggagaagaagaagaacataatttgaggaggagaagatca
agctctaagcacagctcccatgattatgaaaatgaaagggagtcgtcaagaagcagggac
agggagagggacaaaggacgtgataaggatagagataggagtagagacaaggaaagggat
cgtgatcgcgaaaaagatcgtgatcgtcgccacagagaacgaagtgagaggcgtaggact
agagatagagatgatgatgctaccatttctgatgaaggtcctgagggccgggaatactgg
cagaaagattatgatagagatagagatgagaggcatagacataggtcaaaatcttatgag
agagagcgagaggaaggtcatagacacaggtccaaatcgtacgacaaggatagagaggaa
agagatagacacaggtcaaaatcctatgacaaagatagagaggaaaggcgtggacacaga
tctcactcaaggggaaaatctggtcatagatcaagatcacgttctcgatctcgttcacgc
tcgaaaagcaaaaggatcagcgggtttgacatggcacctcctacttctgctctgttacct
ggtgctcctgctgttacagatgctcctgcaggtcaacttcctgccactgccccagctatt
ccaggaatttttcctaacatgttccctttggcatctgcacagcttggagctattcctgtt
atgccagtccaggcaatgactcagcaggcaactagacatgcaaggcgagtttatgtgggt
ggacttcctccgagtgcaaatgaacagtcagtggctacctactttaatcatgttatgtcg
gcaattggtggaaacactgctggtccaggagatgctgttgttaatgtttatataaaccat
gagaaaaagtttgctttcgttgagatgagatccgtggaggaggccagcaatgccatggcc
ttagatggcattatctttgagggaacacaagtaaaagttagaagaccaactgattataac
ccctccctggctgcaacacttggtccgagccaaccaaatccaaaccttaaccttgctgca
gtgggattatcaccaggatccactggtgggcttgaaggtcctgaccgtatttttgtggga
ggcctgccatactatttcactgaagctcagattagggagttgcttgagtcctttggccct
cttcgggggtttaatctggtcaaagataaagaaactggaaactcgaaaggctatgccttt
tgtgtttactctgacgtgtctgttacagatattgcatgtgcagctcttaatgggattaag
atgggtgataaaactcttactgtcagacgtgcaagtcaaggtactttacagcctaagcca
gagcaggagagtatattaatgcatgctcagcaacaaatagcactgcagagactcatgcta
caacctggtggacctcctactaaagtcttatgcctaacaaatgtggttagcgcggatgag
ctcaaagatgatgaagactatgaagatatagtggaagatatgagaactgaatgcgggaaa
tttggtaatttagtgagtttagtcatcccacgcccaaggcctgatggtgaaccgacacca
ggggttggaaaggtctttttggagtacacggatgtggagggttcctcgagagctcaacaa
ggattgaatggcagaaaattcggaggaaacccagttgttgctgtcttttattcggagaac
aagttctctgagggggactacgagggctag

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