Nicotiana sylvestris (wood tobacco): 104249461
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Entry
104249461 CDS
T05026
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsy03021
]
104249461
03036 Chromosome and associated proteins [BR:
nsy03036
]
104249461
Transcription machinery [BR:
nsy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
104249461
Chromosome and associated proteins [BR:
nsy03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
104249461
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
Tex_central_region
HHH_9
OB_PDCD11
HHH_3
SH2
Tex_N
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
104249461
NCBI-ProteinID:
XP_009804197
UniProt:
A0A1U7YJD0
LinkDB
All DBs
Position
12:114638078..114648074
Genome browser
AA seq
1643 aa
AA seq
DB search
MAGKNVISDDEDEVGIEEEERDEEPVDGDAVDERDEEDEDEEEDEEGQDEYEKDGFIVDD
VEEEEEEDEEDRADSDDERQKKKKRKKRESERNYMLDEDDYELLQESNIAVPRPKLESKK
FKRLKKAQRDMDDARSGFSEEEEFDETGRRGRTAEEKLEHSLFGDDEGQPLEDIAEEEER
LEEEEDADIGEEDEMADFIVDEEEVDEHGAPIRRKKVNKKKSRQASGVSSSALQEAHDIF
GDVDELLLRRKQDRAKSGKHDESGEWSERRLEDEFDPTILAEKYMTEKDEHIRKIDVPER
MQLSEESTGPVPPEAISVEESNWIYNQLAAGVVPFFKIKKKDSGKSDEESELPIDKDDIM
RFLDLMHGQKLDVPFIAMYRKEECMSLLKDPEEDETSDDGPNNSDKKPAVRRQKVLWAIQ
DLDRKWLLLQKRKSALELYYKKRFQEESRRVYDETRLKLNQQLFESITKSLQAADCEREV
DDVDSKFNLHFPPGEVGVDEGQYKRPKRKSQYSICSKAGLWEVASKLGYSAEQFGSHMSC
ESMGDLLEDARETPEEMASNFTCAMFETPQAVLKGARHMAAVEISCEPSVRKQVRKTFMD
DAKVSTSPTPDGNVVIDSFHQFAGVKWLRDKPLSDFEDAQWLLIQKAEEEKLLKVTIKLP
EVVLDKLITDSRDHYLSDGVSKSAQLWNEQRKLILEDAFFNFLLPSMEKEARSLLTSRAK
SWLLLEYGKFLWNKVSVGPYQRRESDVGSDEELAPRVMACCWGPGKPATTFVMLDSSGEV
LDILYAGSLSLRGQNVNDEQRKKNDQQRLLKFMMDHQPHVVVLGAVNLSCTRLKEDIYEI
IFKMVEDNPRDVGHEMDNLNIIYGDETLPHLYENSRISVDQLPGQSGIVRRAVALGRYLQ
NPLAMVATLCGPGREILSWKLSTLDSFLTPDEKYGMVEQVMVDVTNQVGVDLNLAISHEW
LFAPLQFISGLGPRKAASLQRSLVRQQTIFTRKDILTEHHLGKKVFVNAVGFLRVRRSGY
TANSNTYIDLLDDTRIHPESYGLAQELAKDIYLNDIGEENNDDDELLEMAIEHVREKPHL
ARLLKVPNYAKAKDRQDKEETLNDIRLELMQGFQDWRRQYVEPSQDEEFYMISGESEETL
SEGRIVQATVRRVQPQKAICALESGLTGILTKEDSSDDWREVNDLTEKMREGDILTCRIK
SIQKNRYQVFLSCKENDMRNNRYQNNQNLDPYYHEDRSSLQAEKDKVRKEKELAKKHFKP
RMIVHPRFKNITADESMEFLSDKEPGESIVRPSSRGPSYLTLTLKVYDGVYAHKDIVEGG
KEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVAHLKAMLNYRKFRKGSKAEVDE
LLRIEKSEYPMRIVYSFGISHEHPGTFILTYIRSSNPHHEYVGLYPKGFKFRKRMFEDID
RLVAYFQRHIDDPHDSAPSIRSVAAMVPMRSPAGGGSGFGGSWGGSSNDSGRRGGQSGDR
DSRPGRNDYRNRSSQDDPSGLPPRPYGGGGRGRGRGRGRGTYGRGRGNNDNDGQDSDYGT
QKWGSKEGGGGWGAEVQNSPARDTFSGGWSGGGSGAGGGSGDGGGWGGNGGGAGWGQDTG
GQSDDSGWGGGKKGSQSGGSGGW
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaaaaacgtgatctccgatgacgaagacgaagttggaattgaggaagaagag
agggacgaagagcctgttgatggagacgcagtagatgaacgggacgaggaggatgaagac
gaagaagaagacgaagaaggtcaggatgaatatgaaaaagatgggtttatagtagatgat
gtggaagaagaagaggaagaggatgaagaagatagagctgacagtgatgatgagaggcaa
aagaagaagaaaaggaagaaaagggagtcagagaggaattacatgcttgacgaagatgat
tatgaacttctccaggaaagcaacattgcggtgcctcgtccgaaacttgagagcaaaaag
ttcaagcggctaaaaaaagctcagagggatatggatgatgcgcgttctggtttttctgag
gaggaggagtttgacgaaactgggaggcgtgggcgtacagctgaggagaagctcgagcat
agcttatttggtgatgatgaagggcaaccactcgaggatattgctgaggaggaagagcgg
ctggaggaagaagaggatgctgacattggagaggaagatgaaatggccgactttattgtt
gatgaagaagaagttgatgaacatggtgctcctattagaaggaagaaggtgaacaaaaag
aagtccaggcaggcatcaggagtttcgtcttctgctctccaggaagcccatgacatattt
ggtgatgttgatgaacttttattgcgtcgaaaacaagaccgggcaaaatcaggcaagcac
gacgaatctggtgaatggagtgaaaggagacttgaagatgaatttgatcctactattcta
gctgagaagtatatgacagagaaggatgagcacattcggaaaatagatgtccctgaaaga
atgcagttatctgaggaaagcactggtcctgtgccacctgaagctattagtgtggaagag
agtaactggatctacaatcagcttgctgctggcgttgtgcctttctttaagattaagaag
aaagatagtgggaaaagtgatgaagagagtgagctaccaatagataaagatgacattatg
agatttctggatttgatgcatggacagaagcttgatgtcccattcattgccatgtaccgg
aaagaggaatgcatgagcttattaaaggatccagaagaggatgaaactagtgatgatggc
cccaataattctgacaaaaagcctgctgtaagacggcagaaggtgctttgggcaatccaa
gatttagacagaaagtggctcctccttcagaagcggaagtctgcgctcgagttatactat
aagaagcgctttcaagaagagtcccgtagggtgtatgatgaaacacgtctaaagttgaat
caacaactctttgaatcaattacaaaatcactccaggcggctgactgtgaaagagaggtt
gatgatgttgactcaaaatttaacttgcacttcccacctggagaggttggtgtggatgaa
ggacaatataagaggccaaagaggaaatcacaatacagtatttgcagcaaagccggctta
tgggaagttgcaagcaagttgggatatagtgccgaacaatttggttcacacatgtcttgt
gaaagtatgggggatttgctggaggatgctagggaaacaccagaggagatggcgtcgaac
ttcacctgcgcaatgtttgaaacaccgcaagctgtgcttaaaggcgctagacacatggcg
gcagttgagataagctgtgaacctagtgtccggaaacaggtgcgtaagacctttatggat
gacgccaaagtatcaacgagtcctactcctgatgggaatgtggtgattgattccttccat
caatttgctggagtaaagtggttacgggataaacctctctctgattttgaggatgcacag
tggcttctcatacagaaggctgaagaggagaaactcctcaaagttactatcaagttgccc
gaagttgttcttgacaagctgataactgactcgagagatcattatctcagtgatggtgtg
agtaaatctgctcagttatggaatgagcagagaaagttaatacttgaggatgcatttttc
aattttcttctgccttcgatggagaaggaagctaggtcgttgctgacgagtagagctaag
agctggctgcttttggaatatggaaaatttttgtggaataaagtgtctgtgggaccatat
caacgcagagaaagtgatgtcggctctgatgaagagcttgcgcccagggttatggcttgc
tgttggggccctggaaagccagcaactacttttgtgatgttggattcgtcgggagaggtt
ctggatatcctgtatgctgggtctctcagccttcgtgggcagaatgttaatgatgagcag
cggaagaagaatgaccagcagagactgttaaaattcatgatggaccaccaaccacatgtt
gtggtgctgggagctgtaaatctatcttgtacacggcttaaggaggatatttatgagata
attttcaaaatggtggaggataatccaagagatgttggtcatgagatggataatttgaac
ataatatatggagacgaaacccttccacatctctatgagaattcccgcatttcagtggac
cagctccctgggcagtcaggtattgttaggcgcgctgtggcactgggacgttatcttcaa
aatcctttagcaatggtagcgacattgtgtggaccaggcagggagattttatcttggaag
ctgagtactttagatagttttcttacaccagatgagaagtatgggatggttgaacaggtt
atggttgatgtaactaaccaggtgggtgttgatcttaatttggctataagtcatgaatgg
ttgtttgcccctttgcaatttatttcggggctaggtcccagaaaggcagcatctcttcaa
agatccttggtaagacagcagacaatcttcactaggaaggatatcttgactgaacatcat
cttggtaaaaaggtatttgtgaatgcagttggcttcttgcgagtaaggcgtagtggatac
actgctaacagtaatacatatattgacttgttggatgatacaaggatccacccagaatcc
tatggtcttgcacaggagttggccaaagatatttatcttaatgatatcggtgaagaaaat
aatgatgatgatgaactgcttgaaatggcaatagagcatgttagagagaagccacatctg
gcgaggttacttaaagttccaaactacgccaaagccaaagatcgtcaggacaaagaggaa
actctcaacgatataaggttagagctgatgcaagggtttcaagattggcgtagacagtat
gtggagccaagccaggatgaggagttctatatgatttctggcgagtctgaggagacactt
tccgagggaagaattgtgcaggcaacagttcgccgagttcaacctcagaaagctatctgt
gctctcgagtctggattgactggcattcttaccaaagaagattcttcagatgattggaga
gaggtcaatgatttgactgaaaaaatgcgtgaaggtgatatcttaacttgcagaatcaag
tcgatccaaaaaaatcggtaccaggttttccttagctgtaaagagaatgatatgagaaat
aataggtatcagaataatcagaacttggatccatactaccatgaagatcgcagtagttta
caggctgaaaaggataaagttcgtaaagaaaaggagcttgcaaagaagcatttcaagcca
aggatgatagttcatcctcgattcaaaaatataacggcagatgaatcaatggagttcttg
tcggacaaggaaccgggtgaaagtatcgtacgtcccagctcacgcggaccatcttatttg
actttaactctcaaagtgtacgatggagtttatgctcacaaggatattgtggaaggtgga
aaggaacataaggacataacaagcttgctccgtatcggaaaaacactgaaaataggagag
gatacttttgaggatttagatgaggtaatggatcggtatgtcgatccattagtagctcat
ttgaaggcaatgctgaattaccgcaagtttaggaagggatcaaaggcagaagttgatgaa
cttttgagaattgagaaatctgagtaccctatgaggattgtctatagctttggtatttct
catgaacaccctgggacattcattttgacttacatacggagttccaacccgcaccatgag
tatgttggtctgtacccgaaaggatttaaattccgcaagaggatgtttgaagatattgat
cgccttgtggcatattttcaaagacatattgatgatccccatgactctgcaccatcaata
cgatcagttgcagcgatggtacctatgcgcagccctgcaggtgggggctcaggatttggt
ggcagttggggtggttcatccaatgatagtggtcgaagaggtggtcagtctggggacaga
gattctagaccaggtagaaatgactacagaaatcgaagcagtcaggatgatccaagtggg
ttgccgcccaggccctatggtggtggtggtcgtgggcgtgggcgaggacgtggtcgggga
acatatggacgtggtagaggaaataacgacaatgacgggcaagattcagattatggcact
caaaagtggggttctaaggaaggtggaggaggatggggtgcagaagtccaaaattcacct
gctagagacactttctctggtggttggagtggtggtggaagtggtgccggaggtggtagc
ggagacggaggtggttggggaggcaatggtggtggtgctggctgggggcaggataccggt
ggtcagtccgatgattctggctggggtggcggtaaaaagggttcacaatccggtggcagc
ggagggtggtga
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