Nicotiana sylvestris (wood tobacco): 104249558
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Entry
104249558 CDS
T05026
Name
(RefSeq) uncharacterized protein
KO
K07573
exosome complex component CSL4
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104249558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104249558
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
104249558
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
104249558
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
RRP40_S1
S1_RRP4
CHASE5
Motif
Other DBs
NCBI-GeneID:
104249558
NCBI-ProteinID:
XP_009804302
UniProt:
A0A1U7YJN7
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Position
5:complement(116687232..116691495)
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AA seq
200 aa
AA seq
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MTKAMETETQEVVTPGQVLGKASQLKAGKGAYVSTEHDTVYASLTGFRSLIPPPSDSLDQ
RPTVEVTGHKAHGAVPQPGSIVFARVTKVMPRMASADIVCVDSKSVREKFTGIIRQQDVR
ATEIDKVDMHLSFRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAESAAGGTMVPISWT
EMQCPLTGQVEQRKVAKVEA
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaagcaatggaaactgagactcaagaggtggtgacgccgggacaagtattgggt
aaagcgtcacagttgaaagccggtaaaggagcttacgtttcaaccgaacacgacaccgtt
tacgcctctctcaccggtttccgttctctcatacctccgccttctgactctcttgaccag
agaccaacagtggaagttactggtcataaggcccatggagctgttcctcagcccggttca
attgtttttgctagagtcactaaggttatgcctagaatggcttcagcagacatagtgtgt
gttgattccaagtctgtgcgtgagaaattcaccggcattattaggcaacaggatgtgaga
gcgactgagattgacaaagtcgacatgcatttgtccttccgcccgggtgatattgttcgt
gcattggtgctatcacttggagatgcacgggcatattatctgtcaactgcaaaaaatgag
ctgggtgttgtatctgctgaaagtgcagctggtggtaccatggttccaattagctggaca
gaaatgcagtgccctctaacaggtcaagtagaacagagaaaggtggccaaggttgaagct
tga
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