Nicotiana sylvestris (wood tobacco): 104250046
Help
Entry
104250046 CDS
T05026
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104250046
03041 Spliceosome [BR:
nsy03041
]
104250046
03036 Chromosome and associated proteins [BR:
nsy03036
]
104250046
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104250046
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104250046
mRNA cycle factors
Common to processing body (P body) and stress granule
104250046
Spliceosome [BR:
nsy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104250046
Chromosome and associated proteins [BR:
nsy03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104250046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-GeneID:
104250046
NCBI-ProteinID:
XP_009804880
UniProt:
A0A1U7Z1V3
LinkDB
All DBs
Position
10:1291834..1298668
Genome browser
AA seq
603 aa
AA seq
DB search
MPTSWADSVSAAENLAAAAPPKSAYVPPHLRNRPASTDPPAQASYAGAAASGQGQSGYGG
PNVGGSRWSGPRNDFQSGYGGGGGRGGGWNSRTGGWDRGREREANPFAEDDAEPFVEPEN
SGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEAVNQNIRRCKYVKPTPVQRHAIPIVL
SGRDLMACAQTGSGKTAAFCFPIISGIMRGQFPRPPRPRVAFPLALILSPTRELSCQIHD
EAKKFAYQTGVRVVVAYGGAPINQQLRELERGVHILVATPGRLVDLLERARVSLQMIRYL
ALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQRLALDFLSNYIFLA
VGRVGSSTDLIVQRVEYVQETDKRSHLMDLLHAQRANGAHGKQALTLVFVETKKGADSLE
HWLCMNGFPATAIHGDRTQQEREHALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDI
PNDIDDYVHRIGRTGRAGKTGLATAFFNENNSSVARALADLMQEANQEVPAWLSRYAARS
SHGGGKNRRGGNRFGGRDFRKDTSFNRGVTDYYGGGANMSSGYGASGGYAASYGGAGVTS
AWD
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgccaacatcgtgggctgattcggtttctgcagccgagaatttggctgctgctgctccc
ccaaagtcagcatacgttccaccacatcttagaaatagacctgcttcaactgatcctcct
gcacaggcttcctatgctggggctgctgcatctggtcagggccaaagtggttatggtggc
ccaaatgtaggtggaagtcgttggagtggtcctaggaatgatttccaatctggttatggt
ggtggaggaggccgtggcgggggctggaatagcagaacaggtggttgggatcgagggagg
gagcgggaagctaacccgtttgcagaggatgatgctgaaccctttgttgaaccagagaat
tctgggatcaactttgatgcgtatgaggatattcctgttgagacaagtggggataatgtg
ccccctcctgtaaacacttttgctgagattgatctaggtgaagctgtaaaccaaaatatc
aggagatgcaagtatgttaagccaacccctgtgcaacggcatgctataccaattgtactc
tctggtagagatttgatggcttgtgctcagactggttctggcaaaactgctgctttctgc
ttccccatcataagtggaatcatgcggggccaatttccaagaccaccacgtccgcgggtg
gcatttccactggctcttattctttctccgacaagggagctctcatgccaaatccatgat
gaagctaagaaattcgcatatcagactggtgtcagggtggttgttgcttatggtggtgcc
cccataaaccaacagcttcgagaactagagagaggagtacatattcttgtggcaacacct
ggacgattggttgatttacttgagagagctagagtctcgttacagatgataaggtacttg
gctttagatgaggcagatcgaatgcttgatatgggttttgaacctcaaataaggaaaatt
gtgcaacaaatggacatgcctccaccaggtgtaagacagacaatgctattcagtgccact
tttcccaaagagattcagagactggcattggattttctttcaaattatatctttttggcc
gtgggaagggttggctctagtactgatctgattgtccaaagagttgaatacgttcaggag
actgacaagagaagccacttgatggatctccttcatgcacagagggctaatggtgctcat
ggcaagcaagctcttacccttgtttttgttgagacgaaaaaaggagctgattcattggag
cattggctttgtatgaatggtttccctgctactgctattcatggcgatagaactcagcag
gaaagggaacatgccctgagatccttcaaaagtggtaacacgccaatcttggttgcaaca
gatgtggcagcacgtggtcttgatataccccatgttgcacatgttgtcaactttgacatt
ccaaatgacattgatgattatgtccaccgtattggaaggacaggacgagcaggaaaaaca
ggtttagcaacagccttctttaacgagaacaattcgtcagtggcaagagcactggctgat
ctgatgcaagaagcaaaccaagaagtacctgcttggctctctcgctatgctgctcgatct
tcacatggaggcggcaaaaatcgtcgtggtggaaatcgttttggcgggcgtgatttccga
aaggatacctctttcaatcgaggggtcacagactactatggtgggggggccaatatgagc
agtggctatggtgcatctggtggttatgctgcatcatatggtggtgctggtgtgactagt
gcctgggactaa
DBGET
integrated database retrieval system
