Niveibacterium terrae: ACHFB9_03915
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Entry
ACHFB9_03915 CDS
T11146
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ntb Niveibacterium terrae
Pathway
ntb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ntb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACHFB9_03915 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ntb03021
]
ACHFB9_03915 (rpoD)
Transcription machinery [BR:
ntb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACHFB9_03915 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
Motif
Other DBs
NCBI-ProteinID:
XPC81987
LinkDB
All DBs
Position
complement(853309..855270)
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AA seq
653 aa
AA seq
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MAVKKDAKDARKDTPKSKSAKAKEKDALLALQAEQPADAEARRTRLKTLIALGKERGYLT
YAEVNDHLPDDMVDAEQIESIISTFGDMGIKVYDEAPAAEELLISDNVPQAVDDEAAQEE
AEQALSSVDSDFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMVLAISACPT
TIADIIATADKVDREEMRIDELVDGLIDPNAPEESAQQADSDEVELDDTEDDDEEEDDGG
AAKLSASQLQLKADAKIRFDVIRDLYEKMMASLSKKGAEDKNYLKIQGQISAELMNIRFT
ARSIERLCDTVRHMVENVRKHERKVLDLCVERSGMPRLHFIKVFPGNETNMDWLKGEIGS
GANYASTLIRMQPAILEEQQKLLELQEHIGIPLKDLKDINKQMSTGEAKMRRAKREMTEA
NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS
IADQARTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAKKMEMPEEKIRKIMKISK
EPISMETPIGDDDDSHLGDFIEDTATVAPADAAEYSGLRNATKDVLDSLTPREAKVLRMR
FGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLRSFLDGEG
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggccgtcaaaaaagatgccaaagatgcacgcaaggacacgcccaagagcaagtccgcc
aaggccaaggaaaaagacgccctcctcgccctgcaggcagaacagcccgctgatgccgaa
gcgcgtcgcacccgtctgaagacgctgatcgcactgggcaaggaaagaggctacctgacc
tacgccgaggtcaatgaccacctgcccgacgacatggtcgatgccgaacagatcgaatcg
atcatctcgaccttcggcgacatgggcatcaaggtctatgacgaagcgcccgccgcggaa
gagctgctgatctccgacaacgtgccccaggccgtcgacgacgaagccgcccaggaagag
gccgaacaggcgctctcctcggtcgattccgacttcggccgcacaaccgacccggtccgc
atgtacatgcgcgagatgggcaccgtcgaactgctgacccgcgaaggcgaaatcgaaatt
gccaagcgcatcgaggatggcctcaagcacatggtgctggccatctccgcctgcccgacg
acgatcgccgacatcatcgcgacggccgacaaggtcgaccgtgaagagatgcggatcgac
gaactcgtcgatggcctgatcgaccccaacgctccggaagagtcggcgcagcaggccgac
agcgacgaagtcgagctcgacgacaccgaggacgacgatgaagaggaagacgacggcggc
gccgccaagctgagcgcgtctcagctgcagctcaaggccgatgcgaagatccgcttcgac
gtaatccgcgacctctacgagaagatgatggcctcgctgtcgaagaagggcgccgaggac
aagaactacctgaagatccagggccagatcagcgccgagctgatgaacatccgcttcacc
gcgcgttcgatcgaaaggctctgcgacacggtccgccacatggtcgagaacgtccgcaag
cacgagcgcaaggtgctcgatctgtgcgtcgaacgctcgggcatgccgcgcctgcacttc
atcaaggtcttccccggcaacgagaccaacatggactggctcaagggcgagatcggctcg
ggcgccaactatgcgtccacgctgatccggatgcaaccggccatcctcgaagaacagcag
aagctgctcgaactccaggaacacatcggcatcccgctcaaagacctcaaggacatcaac
aagcagatgtccaccggtgaagcgaagatgcgccgcgccaagcgcgagatgaccgaagcg
aacctgcgtctggtcatctcgatcgcgaagaagtacacgaaccgcggcctgcagttcctc
gacctgattcaggaaggcaacatcggcctgatgaaggcggtggacaagttcgaataccgc
cgcggctacaagttctcgacctatgcgacctggtggatccgtcaggccatcacgcgctcg
atcgccgaccaggcccgcacgatccgcatcccggtgcacatgatcgagacgatcaacaag
atgaaccggatctcgcgccagatcctgcaggagaccggcctcgaaccggatccggcgaca
ctggccaagaagatggagatgcccgaggagaagatccgcaagatcatgaagatctccaag
gagccgatctcgatggagacgccgatcggcgacgacgacgactcccatctgggcgatttc
atcgaggacaccgcgaccgtggctccggccgacgccgccgagtactcgggcctgcgcaac
gcaacgaaggacgtgctcgacagtctgacgccgcgcgaagcgaaggttctgcggatgcgc
ttcggcatcgagatgaacaccgaccacacgctcgaagaggtcggcaagcagttcgacgtg
acccgcgagcgcatccgccaaatcgaggcgaaggcgctgcgcaagctgcgtcacccgtcc
cgttcggataaactgcgcagcttcctcgacggcgagggctga
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