Niveibacterium terrae: ACHFB9_05815
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Entry
ACHFB9_05815 CDS
T11146
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ntb Niveibacterium terrae
Pathway
ntb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ntb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACHFB9_05815 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ntb03400
]
ACHFB9_05815 (mfd)
Enzymes [BR:
ntb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACHFB9_05815 (mfd)
DNA repair and recombination proteins [BR:
ntb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACHFB9_05815 (mfd)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XPC82351
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Position
complement(1293946..1297377)
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AA seq
1143 aa
AA seq
DB search
MSSPSRPILPVLATLPAPAPGQRLALPKLHGSADSAALAQIAASRPVLAVCASPLDAQRL
REEIAWLAPGLRVHLLPDWETLPYDNFSPHQDLISERLATLYAILRGEADIAIVPAATAL
YRLCPPAYLAAHTFFIKQGEKLDIEQLRQQMVIAGYEHVTQVVRPGEFSVRGGLIDLFPM
GSPLPFRIELFDEDVESLRTFDPDTQRTVYPVQQIRLLPAREFSIDEQGRADFRTRFREQ
IEGDPSRSTIYKDVSNGIAPAGIEYYLPLFHEQCATLFDFISSDVALALVGDVNGAIEDF
WRETRSRHRLLGGDPARPLLAPEKLFLSVEQFFVAAGERSRFTFGGTDTGLTEPLPELAV
ERRATDPLYRLRTFVAGFTGRILILAESAGRQQTMLDYFAEHDISVSTSADLAAFLASDA
RIALTAGPLASGFILSAENLALLTETELYASQARSRTRRDTRRAATMEGWLRDLSELKVG
DPVVHVSHGIGRYKGLIYLDLGEGETEFLNLEYNGGDKLYVPVSQLHVISRYAGADPEHV
DLNKLGSGQWEKAKRRAAQQVRDTAAELLALYAQRAAREGHRFDFKQGDLDAFAEGFGFE
ETPDQLAAIQAVETDMRSGRPMDRLVCGDVGFGKTEVALRAAFIAIADGKQVAVLTPTTL
LAEQHFQTFSDRFADWPVRIAELSRFRSAKEQTEALSQLAEGKLDILIGTHRLLQKDVEF
KRLGLVIIDEEHRFGVRQKEALKALRSEVDILTLTATPIPRTLGLALEGLREFSVIATAP
QKRLAIKTFVQKHSKGIIREAVLREFKRGGQVYFLHNEVETIENARQMLAELIPEARIVV
GHGQLPERELERVMRDFTNQRANLLLCTTIIETGINIPTANTIIINRADRFGLAQLHQLR
GRVGRSHHQAYAYLLTDANAKPTSQAQKRLEAISMMEELGSGFYLAMQDLEIRGAGEVLG
EHQSGEIQQIGFSLYTEMLKRAVKSLQSGKEADLAQPLDITSEINLHAPALLPSDYCSDI
GERLTLYKRMANGESADEMQDIQEELIDRFGELPAQTQTLLDTHRLRIAAKPLGIIKIDA
SESRVDLTFVPEPPIEPIKIIQLIQKNRNYRLAGQDRLSVTVGSETTKERVTRIREILRL
LSA
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccccctcccgccccatccttcccgtcctggccactcttcccgccccggctccc
ggtcagcgcctcgcccttcccaagctgcacggttcggccgattcggcggctctggcccag
attgcggccagccgaccggtgctggcggtctgcgcgagcccgctcgacgcgcagaggctg
cgcgaggagatcgcctggctcgcccccggcctgcgcgtgcacctgctgccggactgggag
accctgccctacgacaacttctcaccccaccaggatctgatctcggaacggctcgcgacg
ctgtacgcgatcctgcgcggcgaggctgacatcgcgatcgtgccggcggcgaccgcgctc
taccggctgtgcccgcccgcctatctggccgcccacaccttcttcatcaaacagggcgaa
aagctcgacatcgaacaactgcgccagcagatggtcatcgcgggctacgagcatgtgacc
caggtcgtgcgccccggggagttctcggtccgcggcggcctgatcgacctcttcccgatg
ggctcgcctctgcccttccgtatcgaactctttgacgaggacgtcgagtcgctgcgcacc
ttcgatcccgacacccagcgcaccgtctatccggtccagcagatccgtctgctgccggcg
cgtgaattctcgatcgacgagcagggtcgcgccgatttccgtacccgctttcgcgaacag
atcgaaggcgatccgtcgcgcagcacgatctacaaggacgtctcgaacggcatcgctccg
gctggcatcgagtactacctgccgctcttccacgaacagtgcgcgacgctcttcgacttc
atctccagcgatgtcgcgctggctctggtcggtgacgtcaatggcgcgatcgaggacttc
tggcgcgagaccaggagccgccaccgcctgctcggcggcgatccggcccgccccctcctc
gcccccgaaaagctcttcctgtcggtcgaacagttcttcgtcgccgcgggcgagcgttcc
cgcttcacattcggcggcaccgacaccggcctcaccgagccactgcccgaactcgcggtc
gagcgacgcgcgaccgacccgctgtaccggctgcgcacttttgtcgccggcttcaccgga
cgcatcctgattctcgccgaatcggccggtcgccagcagactatgctcgactacttcgcc
gaacacgacatcagcgtctcgaccagcgctgacctggcagcctttctcgcgtccgacgcg
cgcatcgctctgacagcagggccgctcgcgagcggtttcatcctgagcgccgagaatctg
gccctgctcaccgagaccgagctctatgcgagtcaggcgaggagccgaacccgccgcgac
acgcgccgcgccgcgacgatggaaggctggctgcgcgacctctcggaactcaaggtcggc
gatccggtcgtccatgtctcgcacggcatcggccgttacaagggcctgatctatctggat
ctgggcgagggcgagaccgaattcctgaacctcgaatacaacggcggcgacaagctttac
gttccggtctcccagctccatgtgatcagccgctatgccggcgccgaccccgagcacgtc
gacctgaacaagctgggcagcggccaatgggaaaaagccaaacgccgcgccgcccagcag
gttcgcgacaccgcagccgaactgctcgcgctctacgcgcagcgcgctgcccgcgaaggc
caccgtttcgatttcaagcagggcgatctggacgctttcgccgaaggcttcggtttcgag
gagacccctgaccagttggccgcgatccaggccgtcgaaaccgacatgcgctcgggccga
ccgatggatcgcctggtctgcggcgatgtcggcttcggcaagaccgaagtcgcgctgcgc
gccgctttcatcgcgatcgccgacggcaaacaggtcgcagtgctgacaccgacgacgctg
ctcgccgagcagcacttccagaccttctcggaccgctttgccgactggccggtcaggatc
gccgaactgtcgcgtttccgcagtgcgaaagagcagaccgaggcactgagccagctcgcc
gaaggcaaactcgacatcctgatcggcacgcaccggctgctgcagaaagacgtcgaattc
aagcgccttggcctcgtcatcatcgacgaggagcaccgcttcggcgtgcgccagaaggaa
gcgctcaaagcgctgcgctcggaagtcgacatcctgaccctgaccgcgacgccgattccg
cgcacgctgggcctcgcgctcgaaggcttgcgcgagttctcggtcatcgcgaccgcgccg
cagaagcggctggcgatcaagactttcgtgcagaagcactcgaagggaatcatccgcgaa
gcggtgctgcgcgagttcaagcgcggcggccaggtctacttcctgcacaacgaagtcgag
acgatagagaacgcgcgccagatgctcgccgagctgatccccgaagcgcggatcgtcgtc
ggccacggccagttgcccgagcgcgagctcgaacgggtcatgcgcgacttcacgaaccag
cgcgcgaacctgctgctgtgtacgacgatcatcgagaccggcatcaacatcccgaccgcg
aacacgatcatcatcaaccgcgcagaccgctttggcctcgcccagctccaccagctgcgc
ggccgggtcggacgctcgcaccaccaggcctatgcgtatctgttgaccgacgcgaacgcg
aagccgacttcccaggcccagaaacggctcgaagcgatctcgatgatggaagagctcggc
tcgggcttctatcttgcaatgcaggatctggagatccgcggcgccggcgaagtgctcggc
gagcatcagagcggcgagatccagcaaatcggcttctcgctctacaccgagatgctcaag
cgtgcggtcaagagcctgcagtcgggcaaggaagcggatcttgcccagcccctggacatc
acgtccgagatcaacctgcacgctccggcgctgttgcccagcgattactgcagcgacatc
ggcgagcggctgaccctgtacaagaggatggccaacggcgaatcagccgacgagatgcag
gacatccaggaagagctgatcgaccgcttcggcgagttgccggcccagacccagaccctg
ctcgacacgcaccggctccggatcgccgcgaaacctctgggcatcatcaagatcgacgca
tcggagagccgcgtcgatctgaccttcgtccccgagccaccgatcgagccgatcaagatc
atccagctgatccagaagaatcgaaattaccgcttggccggccaggacaggctttcggtc
accgtcggttcggaaacgacgaaggagcgcgtcacccggattcgtgagatcctccgcttg
ctctcggcctga
DBGET
integrated database retrieval system
