Niveibacterium terrae: ACHFB9_11610
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Entry
ACHFB9_11610 CDS
T11146
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ntb Niveibacterium terrae
Pathway
ntb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ntb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACHFB9_11610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ntb03019
]
ACHFB9_11610
Enzymes [BR:
ntb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACHFB9_11610
Messenger RNA biogenesis [BR:
ntb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACHFB9_11610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
XPC80002
LinkDB
All DBs
Position
2503197..2504630
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AA seq
477 aa
AA seq
DB search
MSFADLGLIPELLKAVEDAGYSDPTPIQSQAIPVVLEGRDVMGGAQTGTGKTAGFTLPLL
NKISRWASTSTSPARHPVRALILTPTRELAVQVHEAVQTYAKYLPIRTVCLYGGVDIRPQ
IEDLRRGVEVVVATPGRLLDHIEQRSITLGQVEIVVLDEADRMLDMGFIPDIRRILALLP
KQRQSLLFSATFSEEIKRLADTMLRDPQLIEVAKRNTVSETITHRVYPVAAAVKKQLLVW
LLREAEGGDQVLVFVSTKIECGRLSRHLQREGIAADAIHGDKSQMQRTEALEGFKSGAIR
VLVATDVAARGLDIDDLPYVVNYELPGTAEDYIHRIGRTGRAGKHGNAVSLVSPDEHQKL
AAIEKLIKLKIPQHTVPGFDADASPDSAYRVVRNQGADRRAASASRSASPSAPRSTSAPR
PARSTVAPDGFDFSRPYVAKEALNESESSAAESAQPDSPRSARESRPVAFLLGGRGR
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgccgacctcggtctcattcccgaattgctgaaagccgtcgaagacgccggc
tacagcgaccccactcctattcagagtcaagccatccccgttgtgctggaggggcgagac
gtgatgggaggggcgcagaccgggaccggcaagacggcaggcttcacgctgcctcttctc
aacaagatctcgcgctgggccagcacctcgacttcgccagcccgccacccggtgcgcgcg
ctgatcctgacgcccacccgcgagctggcggttcaggttcatgaagcggtgcagacctac
gcgaagtacctgccgatccgcacggtctgcctctacggcggcgtcgatatccgcccgcag
atcgaagacctgcggcgaggcgtcgaagtcgtcgtcgcaacgccgggtcgcctgctcgat
cacatcgagcagcgcagcatcacgctcggccaggtcgagatcgtcgtgctcgacgaagcg
gaccggatgctggacatgggcttcatccccgatatccgccgcatcctcgcactgttgccc
aaacagaggcagagcctgctcttctcggcgaccttctccgaagagatcaagcgcctcgcc
gatacgatgctgcgcgatcctcagctgatcgaagtggccaagcgcaacacggtcagcgaa
acgatcacacaccgcgtctatccggttgctgcggcggtcaagaaacagctgctggtctgg
ctgctgcgcgaagccgaaggcggagaccaggttctggtcttcgtcagcaccaagattgaa
tgcggcaggctctcgcgccatctgcagcgcgaaggcatcgcggcggacgcgatccacggc
gacaagagccagatgcagcggaccgaggcgctcgaaggcttcaagtccggcgcgatccgg
gttctggtcgccaccgacgtcgcggcgcgggggctggacatcgacgatctgccctatgtc
gtcaattacgagttgccgggcaccgccgaagactacatccaccggatcggccgcaccgga
cgcgccggcaagcacggcaacgcggtctcgctggtctcgcctgacgagcatcagaagctc
gccgcgatcgagaaactgatcaagctgaagatcccgcagcacacggttcccggcttcgac
gccgacgcgagtccggactccgcctaccgcgtcgttcgcaaccagggcgccgaccggcgc
gccgcaagcgcatcgcgcagcgccagccccagcgctccgcgcagcacgagcgcgccccgg
cccgcccgctcgacggtcgcgccggacggcttcgatttctcccgcccctatgtcgccaag
gaggcgttgaacgaatccgagtcctcggccgcggaaagcgcacaacccgactcgccccgc
tcagcccgggagagccgccccgtcgctttcctgctcggcggccgcggccgctga
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