Niveibacterium terrae: ACHFB9_12835
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Entry
ACHFB9_12835 CDS
T11146
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ntb Niveibacterium terrae
Brite
KEGG Orthology (KO) [BR:
ntb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ntb03009
]
ACHFB9_12835 (rlmD)
Enzymes [BR:
ntb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACHFB9_12835 (rlmD)
Ribosome biogenesis [BR:
ntb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACHFB9_12835 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_23
Cons_hypoth95
Methyltransf_12
Methyltransf_32
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
XPC80242
LinkDB
All DBs
Position
complement(2781177..2782475)
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AA seq
432 aa
AA seq
DB search
MPVVTIESLDHEGKGVARQEGKTIFVEGALPGEKVEYASYRRKPSFELATAQSILKPSSQ
RVSPRCAHFGVCGGCSMQHLEPSAQVAVKQRVLEDSLWHIAQIRPEVVFPAIYGPTWGYR
YRARIGVRDVPKKGGVLVGFHERRSSYIADMRSCEILPPEVGHKLLDLRALLASMSVPDR
IPQIEIAFGDEQKVLVLRNLLPLEASDIEILKRFGETSGFSMWLQPGGPDTVHPIDPDAD
RLLHYTLPEFDLRLAFRPTDFTQVNVAINRLLIRRAMQLLDPRPGERIADLFCGLGNFSL
PISRRGAHVIGVEGSQALVERAALNAAANGLAERSEFQVANLFEATPESLAALGPLDKLL
IDPPREGAIAVIKALGENSPSRIVYVSCNPATLARDAAVLIHEKGYRLLGAGVANMFPHT
SHVESIALFERA
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgccggtcgtcaccatcgaatcgctcgatcatgaaggcaagggagtggctcgccaggaa
ggcaagacgatcttcgtcgagggtgccctgcctggagagaaggtcgagtacgcgagctat
cggcgcaagcccagcttcgaactggccaccgcccagagcattctcaagcccagctcccag
agagtttcgccgcgctgtgcgcatttcggggtctgcggaggctgctcgatgcagcacctg
gagccttcggcccaggttgccgtcaagcagcgcgtgctcgaggattccctctggcacatc
gcgcagatccgtccggaagtcgtctttccggccatctacggtccgacctggggctaccgc
taccgtgcgcggatcggcgtgcgcgacgtgccgaaaaagggcggcgttctggtcggcttc
cacgaacggcgcagcagctatatcgccgacatgcgctcctgcgagatcctgccgcccgaa
gtcgggcacaagttgctggatctgcgcgcgctgctagccagtatgtcggtgcccgatcgg
attccgcagatcgagatcgctttcggcgacgaacagaaggtgctggtgctgaggaacctg
ctgccgctcgaagcctcggacatcgagatcctgaagcgcttcggcgagacttcgggcttc
tcgatgtggctgcagcccggagggccggacacggttcaccccatcgaccccgatgccgac
cgactgcttcactacacgctgcccgagttcgacctgcggctcgctttccggccgaccgac
ttcacccaggtcaatgtcgcgatcaaccgcctgctgattcgccgcgcaatgcagctgctc
gacccgcggcccggcgaacggatcgccgatctgttctgcggtctgggcaatttcagcctg
ccgatcagccgccgcggcgcgcacgtgatcggcgtcgaaggcagccaggcgctggtcgaa
cgggcggctctcaatgccgctgcgaacggcctcgccgagcgcagcgagtttcaggtcgcc
aacctcttcgaagcgacgcccgagagcctcgcggcgctcggaccgctcgacaagctgctg
atcgacccgccgcgcgaaggcgcgatcgcggtcatcaaggcgctgggcgagaattcgcca
tcgcgcatcgtctatgtctcgtgcaacccggccacgctggcccgcgatgccgcggtgctg
atccacgagaaaggctatcggctgctcggcgccggagtcgcgaacatgttcccgcatacc
tcccacgtcgagtcgatcgcgctgttcgagcgcgcatga
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