Niveibacterium terrae: ACHFB9_14470
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Entry
ACHFB9_14470 CDS
T11146
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ntb Niveibacterium terrae
Pathway
ntb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ntb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACHFB9_14470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ntb03019
]
ACHFB9_14470
03009 Ribosome biogenesis [BR:
ntb03009
]
ACHFB9_14470
Enzymes [BR:
ntb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACHFB9_14470
Messenger RNA biogenesis [BR:
ntb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACHFB9_14470
Ribosome biogenesis [BR:
ntb03009
]
Prokaryotic type
rRNA processing factors
ACHFB9_14470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
XPC80543
LinkDB
All DBs
Position
3118129..3121038
Genome browser
AA seq
969 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDVESASKEQRKSNIYKGIVTRIEPSLEAAFVDY
GAERHGFLPFKEISRAYFRDGVEASKARIQDAIREGQELVVQVEKDERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRVEGDERTELREALDQLEVPSGMSMIARTAAIGRTAEELQ
WDLNYLAQLWKAIDGAAQEQAGAFLIYQEGSLVIRAIRDYFSSDIGELLVDTDDIYEQAR
QFMAHVMPANVHRIKRYRDDVPLFTRFQIEHQIESAYSRQVNLPSGGAIVIDHTEALVSV
DVNSGRATRGADIEETALKTNVEAADEIARQLRLRDLGGLIVIDFIDMESTKNQREVENR
LRDALRFDRARVQTGKISRFGLLELSRQRLRPALAETSYITCPRCTGTGHIRSTESAALH
ILRIVEEEAMKDNTGAVHVQVPVDVATFLLNEKRDDIAQIELRQKVNMLIIPNRHLETPA
HEIIRLRHDQLNQEETVLPSYKMATMPENANYVPPSANTEAKPARQEAAIRNFVPDQPAP
IVEPKPVPAAPAAPGFFQRVLSWFRGEDKPEVEAAPAPKARRRDGRDGRGERGRERNRPE
GRGDKQQRSREERGERNREDKRDEKREEQPRGERAQRGRGERAQAAKPEVQETAKRENAE
RKPRERNRDRTEEPRSEQTAEKREALPREKQGEERRERSPRAERQPRTVEAPQEAPETVI
VTGEENQGAEAAANETENASRRRSRRGRRGGERRGDQGRTLTETMFYPTPEAAAEAASQI
AAQQAAQAAEAPAVQEERKPRAPRRQAEPVEQLFLPTIEAELKTEPAPVAESVEVQVEAA
QPTPVPEEKAQPADEAQHAPEAVVEAEPVVSAPAGVETPVEIEPAVQAPVEAPAAAPVEA
EAAPQAAKPAQMDLLASLGGDDLVMIETASAPATPAPEAEVAPAPARRRRPRKPRVVVED
VLEQVETRN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgttattcaacgcgacgcaggccgaagagctccgcgtcgcaatcgtggac
ggtcagaagctgatcgacctcgatgtcgagtccgcctcgaaagagcagcggaagagcaac
atctacaagggcatcgtgacccgcatcgagcccagtctcgaagctgcctttgtcgattac
ggcgccgagcgccatggtttcctgcccttcaaggaaatctcgcgcgcctatttccgcgac
ggcgtcgaagcctcgaaagcccggatccaggacgcgatccgcgaaggccaggagctggtc
gtccaggtcgagaaggacgaacgtggcaacaagggtgcggcgctgacgactttcgtctcg
ctggccggccgctatctggtcctgatgccgaacaatccgcgcggaggcggcgtgtcccgc
cgcgtcgaaggcgacgagcgtaccgagctgcgcgaagcgctcgaccagctcgaagtgccc
tccggaatgagcatgatcgcgcgcaccgcggcgatcggccgcaccgccgaagaactgcaa
tgggacctgaactatctggcccagctgtggaaggcgatcgacggcgccgcccaggagcag
gctggcgctttcctgatctaccaggaaggcagcctcgtgatccgcgcgatccgcgactat
ttctcgtccgacatcggcgagctgctcgtcgacaccgacgacatctacgagcaggccagg
cagttcatggcccatgtgatgccggccaacgtacaccggatcaagcgctatcgcgacgac
gtgccgctgttcacgcgcttccagatcgaacaccagatcgaatcggcctactcgcgccag
gtcaacctgccctcgggcggcgcgatcgtgatcgaccacaccgaagctctggtttcggtc
gacgtgaactccggccgggcgacccgtggcgccgacatcgaagaaaccgcgctgaagacc
aacgttgaagccgccgacgaaatcgcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggagagcacgaagaaccagcgcgaagtcgaaaaccgg
ctgcgcgacgcgctgcgcttcgaccgcgcccgcgtccagaccggcaagatcagccgcttc
ggtctgctcgaactctcgcgccagcgcctgcgtccggccctggctgaaaccagctacatc
acctgcccgcgctgcaccggcaccggccacatccgctcgaccgaatcggcggcgctgcac
atcctgcgcatcgtcgaagaagaggcgatgaaggacaacaccggcgcggtccacgtccag
gtcccggtcgatgtcgcaaccttcctgctcaacgagaagcgcgacgacatcgcgcaaatc
gagctgcggcagaaggtcaacatgctgatcatcccgaaccgccacctcgaaacgccggcg
cacgaaatcatccgcctgcgccacgaccagctgaatcaggaagagaccgtcctgcccagc
tacaagatggcgacgatgcccgagaacgcgaactacgttccgccttcggccaacaccgaa
gcgaagcccgcgcgccaggaagcggcgatccgcaacttcgttccggatcaacccgccccc
atcgtcgaacccaagccggttccggcagcccctgccgctccgggtttcttccagcgcgtg
ctcagctggttccgtggcgaagacaagcccgaagtcgaagcggctccggcccccaaggcg
cggcgccgcgatggccgcgacggacgtggcgaacgcggacgcgaacgcaaccgtccggaa
ggccggggagacaagcaacagcgttcgcgggaagagcgcggcgagcgcaaccgcgaagac
aagcgcgacgaaaagcgtgaagagcagccccgcggcgaacgcgcccagcgcggccgtggc
gagcgcgcccaggccgcgaagcccgaagtccaggagaccgcgaagcgcgagaacgccgag
cgcaaaccgcgcgaacgcaaccgcgatcgcaccgaagagccccgctccgagcagacggcc
gaaaagcgcgaagcgctgccccgtgagaagcaaggcgaggaacgccgcgagcgcagcccg
cgtgccgagcgtcagccccgcacggtcgaagcgccccaggaggctccggaaaccgtgatc
gtgaccggcgaggaaaaccagggcgcggaagccgccgcaaacgagacggagaacgcgtct
cgtcgccgcagccgccgcggtcgtcgcggaggagagcgtcgtggcgatcaaggccggacg
ctgaccgagacgatgttctacccgactccggaagccgccgcagaagccgcaagccagata
gccgcacagcaagccgcccaagcggctgaagcgcccgccgttcaggaagaacgcaagccg
cgcgcaccgcgcaggcaggctgaaccggtcgaacagctgttcctgccgaccatcgaggcc
gagctcaagactgagcccgcccccgtggccgagtccgtcgaagttcaggtcgaagccgct
cagcccacgcccgtgcctgaagagaaggctcagccggcagacgaagcgcagcacgcgccc
gaagctgtcgtcgaagccgagccggtcgtaagcgcgccggccggcgtcgaaaccccggtc
gagatcgaaccggcggtgcaagctccggtcgaagcaccagctgccgccccggtcgaagcc
gaagcggctccgcaagcagcgaagccggcccagatggatctgctcgcctcgctcggcggt
gacgatctggtcatgatcgaaaccgcctcggctccggccactccggcgcccgaagccgaa
gtagctccggctccggcacgccgtcgccgcccgcgcaagccccgcgtggtcgtcgaggat
gtgctcgaacaggttgaaacccgcaactga
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