Nocardia tengchongensis: KHQ06_35475
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Entry
KHQ06_35475 CDS
T07484
Name
(GenBank) translation initiation factor IF-2 N-terminal domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ntc
Nocardia tengchongensis
Pathway
ntc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ntc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KHQ06_35475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ntc03019
]
KHQ06_35475
03009 Ribosome biogenesis [BR:
ntc03009
]
KHQ06_35475
Enzymes [BR:
ntc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KHQ06_35475
Messenger RNA biogenesis [BR:
ntc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KHQ06_35475
Ribosome biogenesis [BR:
ntc03009
]
Prokaryotic type
rRNA processing factors
KHQ06_35475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
DnaJ_CXXCXGXG
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QVI25356
UniProt:
A0ABX8CZM9
LinkDB
All DBs
Position
complement(7449971..7453018)
Genome browser
AA seq
1015 aa
AA seq
DB search
MPERIRVHALAKLLGTTSKRILAHLTEMGAQARSPQSSLDRTVAETVRDAFGPRDVEGAP
AGPGPIAETTVAAAIAAGDDRAADELAAEEVEAAESAVTPTSSQSTLFASPFLSEAQVEE
QVQYQPAAVVAAPLFLSPDATAVEETRRKRRERKPRVEEPVAAEEKRLHLSAPSEDAATA
VTEDTAAEDAEDEGDWDGDQDREQREGTSRRRRRGRRGRGRGRGEQHGDAEGEDEESDTE
DEPAEAADTEAADEDDDAGVPEGSSSRRRRRRRRRKGGDDNEPEVSDDDPPNTVVHEREP
RSKRRAAAQVDEVQGISGSTRLEAKRQRRRDGREAGRRRPPILTESEFLARREAVDRVMV
VREKHFPEHPTSTTQVAVLEDNILVEHFVTSTGSASMVGNVYLGKVQNVLPSMEAAFVDI
GRGRNGVLYAGEVNWEAAGLGGKERKIEQALRPGDTVLVQVSKDPVGHKGARLTTQISLA
GRFLVYVPGGSSTGISRKLPDTERKRLKEILRDIVPQDAGVIIRTASEGVSEPELARDVE
RLQATWRTIEEQSKQGSGAPKTLYEEPDLLVKVVRDLFNEDFSKLVIEGERAWTTVENYV
RTVAPDMLARVERYDNSAVDVFGSLRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDV
NTGKFTGSGGSNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRR
LTEALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCETCHGRGILVHNYPVESS
APAGGDSGEGVSRREGSRRRRKDRNAAAAEPAPAVEPVAEEPAEKPEDLAEKAEKAATKR
AHPVALAMAAHVTDEELTAEGAALTNGAAASAVTAEATAAAAAAAAEALADEAEAASEVQ
AAASAPAADTVVVESEPEAIESPIAEAKAAVAAVAAAEAAASVPSGRRPARRRVARTAAA
PASDSQGAVFVLSSGEQADKPGFNLDDLAPAVVPPRARPRRRAAGRPAGAPEGEN
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
ttgccggaacggatccgagtgcacgcactggcgaagctgctgggcaccaccagcaaacgt
attctggcccacctgaccgagatgggcgctcaagcgagaagcccgcagtcgagtctggat
cgcaccgtcgccgagaccgtgcgcgacgccttcgggccgcgtgatgtcgagggcgccccg
gcgggtccgggaccgatcgccgaaaccaccgtcgccgccgccatcgccgcgggcgacgac
cgggccgccgacgagctggccgccgaggaagtcgaggccgccgagtctgcggtcaccccg
acctcgtcgcagtccaccctgttcgccagccccttcctgagcgaagcccaggtcgaagag
caggtgcagtatcagccggccgccgtcgtcgcggcgccgctgttcctgtcgccggacgcc
acggccgtggaggagacccgccgcaagcgccgtgagcgcaagccgcgcgtcgaagagccg
gtcgccgccgaggagaagcggctccacctctctgcgccttccgaggacgcggccaccgcg
gtcaccgaggacaccgccgccgaggacgccgaggacgagggcgactgggacggcgatcag
gaccgggagcagcgcgagggcacctcgcgtcgccgccgccggggccgtcgcggccgcggc
cggggtcgcggtgagcagcacggcgacgccgagggcgaggacgaggagtccgacaccgag
gacgagccggccgaagccgccgacaccgaggccgccgacgaggacgacgacgcgggcgtg
cccgagggttcgagcagccgtcgccgccgtcgccgtcgccgccgcaagggcggggacgac
aacgagcccgaggtctccgacgacgatccgccgaacaccgtcgtgcacgagcgggagccg
cgcagcaagcgccgcgccgccgcgcaggtggacgaggtgcagggcatcagcggttccacc
cgcctggaggccaagcgccagcgccgccgcgacggtcgcgaggccggccgccgccgcccg
ccgatcctgaccgagtcggagttcctggcccgccgcgaagcggtggaccgggtgatggtg
gtgcgcgagaagcacttccccgaacacccgacctccacgacccaggtggcggtgctcgag
gacaacatcctggtcgagcacttcgtgacctccacgggctcggcgtccatggtcggcaac
gtgtacctgggcaaggtgcagaacgtgctgccgtcgatggaggccgccttcgtcgacatc
ggccgcggccgcaacggcgtgctgtacgcgggcgaggtgaactgggaggccgccggtctg
ggcggcaaggagcgcaagatcgagcaggcgctgcggcccggtgacaccgtgctggtgcag
gtctcgaaggatccggtgggccacaagggcgcccgcctgaccacgcagatcagcctggcc
ggtcgcttcctggtgtacgtgccgggcggctcctcgaccggtatctcgcgcaagctgccc
gacaccgagcgcaagcggctcaaggagatcctgcgcgacatcgtgccgcaggacgcgggt
gtcatcatccgtaccgcgtcggagggtgtctccgagccggagctggcccgcgacgtcgaa
cggctgcaggcgacctggcgcaccatcgaggagcagtccaagcagggatcgggcgcgccc
aagaccctctacgaggagcctgacctgctggtcaaggtggtccgcgacctgttcaacgag
gacttctcgaagctggtcatcgagggcgagcgcgcctggaccacggtcgagaactacgtg
cgcacggtcgctccggacatgctggcccgcgtcgagcgctacgacaacagcgcggtggac
gtcttcggcagcctgcgcatcgacgagcagctggccaaggccctggaccgcaaggtgtgg
ctgccctcgggcggcaccctggtgatcgatcgcaccgaggcgatgaccgtggtcgacgtc
aacaccggcaagttcaccgggtcgggcgggtccaacctcgaggagacggtgacccgcaac
aacctggaggcggccgaggagatcgtgcgccagatgcggttgcgcgacatcggcggcatg
atcgtcgtcgacttcatcgacatggtgctcgagtccaaccgggatctggtgctacgccgc
ttgaccgaggcgctgggccgcgaccgcacccgccaccaggtttccgaggtcacctcgctg
ggcctggtccagatgacccgtaagaagctgggcaccggcctggtcgaggcgttctccacc
acctgtgagacctgccacggccgcggcatcctggtgcacaactacccggtcgaatcctcg
gctccggccggtggggacagcggggagggcgtgagccgtcgcgagggttcgcgtcgtcgt
cgcaaggaccgcaacgccgctgccgccgagccggccccggccgtcgaaccggtggccgag
gagccggccgagaagcccgaggatctggcggagaaggccgagaaggccgccaccaagcgg
gcccacccggtcgccctcgccatggccgcgcacgtgaccgacgaggaactgaccgccgag
ggcgccgcgctcaccaacggcgctgccgcgtccgcggtgaccgccgaggccaccgcagcg
gcagcggccgctgccgccgaggcgctggcggacgaggccgaggccgcgtccgaggtgcag
gccgccgcgtccgcgcccgccgcggacaccgtggtggtcgaatccgagccggaggcaatc
gaatcgccgatcgccgaggcgaaggcggctgtggccgccgtggccgcggcggaggccgcc
gcatcggtgccgtcgggtcgtcgtcccgcccgtcgccgggtggcgcgcacggccgcggct
cccgcgtccgacagccagggcgcggtgttcgtgctctccagcggtgagcaggccgacaag
ccgggcttcaacctcgacgacctggctccggccgtggtcccgccgcgggcccgcccgcgc
cgtcgggccgcgggccgtcccgccggtgcgccggagggcgagaactag
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