Neurospora tetrasperma: NEUTE1DRAFT84510
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Entry
NEUTE1DRAFT84510 CDS
T03451
Symbol
NEUTE1DRAFT_84510
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nte
Neurospora tetrasperma
Pathway
nte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NEUTE1DRAFT84510 (NEUTE1DRAFT_84510)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nte03019
]
NEUTE1DRAFT84510 (NEUTE1DRAFT_84510)
03041 Spliceosome [BR:
nte03041
]
NEUTE1DRAFT84510 (NEUTE1DRAFT_84510)
03009 Ribosome biogenesis [BR:
nte03009
]
NEUTE1DRAFT84510 (NEUTE1DRAFT_84510)
03016 Transfer RNA biogenesis [BR:
nte03016
]
NEUTE1DRAFT84510 (NEUTE1DRAFT_84510)
Enzymes [BR:
nte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NEUTE1DRAFT84510 (NEUTE1DRAFT_84510)
Messenger RNA biogenesis [BR:
nte03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
NEUTE1DRAFT84510 (NEUTE1DRAFT_84510)
Spliceosome [BR:
nte03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
NEUTE1DRAFT84510 (NEUTE1DRAFT_84510)
Complex C
U4/U6.U5 tri-SnRNP related factors
NEUTE1DRAFT84510 (NEUTE1DRAFT_84510)
Ribosome biogenesis [BR:
nte03009
]
Eukaryotic type
Pre-60S particles
Helicases
NEUTE1DRAFT84510 (NEUTE1DRAFT_84510)
Transfer RNA biogenesis [BR:
nte03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
NEUTE1DRAFT84510 (NEUTE1DRAFT_84510)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
ATPase_2
Helicase_dom4_arc
Epiplasmin
AAA_16
Motif
Other DBs
NCBI-GeneID:
20830732
NCBI-ProteinID:
XP_009852471
JGI:
Neute_matA2_84510
UniProt:
F8MRM7
LinkDB
All DBs
Position
Unknown
AA seq
1066 aa
AA seq
DB search
MDDLFEVFEEQPRAQKKRKASPDVEMADGAAAAAPPTIPNGDAAAAADDVQSPQSPHGQG
DNKRRKKTDEAEPIMTDAFQTAESREVTGAQGFAPTEGESIVLSHNIQHQVALPPDLDYE
YIPLSEHKPPAEPARTYSFKLDPFQALSVASIEREESVLVSAHTSAGKTVVAEYAIAQCL
KKNQRVIYTSPIKALSNQKYRDFQAEFGDVGLMTGDVTINPTASCLVMTTEILRSMLYRG
SEIMREVAWVVFDEIHYMRDKIRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKI
HRQACHVVYTDFRPTPLQNYFFPAGGKGILLIVDEKGNFKENNFNQAMAMIEEKKGTDSN
DWSAKQKGKGKNKKTNKGGEAADEKADIAKIIKMILKKNFQPVIVFNFSKRECEQMALAS
SSMKFNAPDEENMVNKVFENALASLSEDDKNLPQISNILPLLRKGIGVHHSGLLPILKET
IEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWDGQQRRPLTSSEYIQMAGRAGR
RGLDDRGIVIMMVDDKLEPETARAIVVGNQDKLNSAFHLGYNMVLNLLRIEAISPEYMLE
RCFFQFQNAASVPQLERELISLQQERDAIIIPDESIVKDYYGVRQQLEEYNKDMVFVIQH
PQNCLGFFQEGRLIHIKSPSGVDYGWGVLIKHIQRQTPKNGQPPYPEQESYVLDVLLKVS
GDFNPKTRGEGPMPEGIMPAGKDSKNARWEVVPCLLNCLRALGQLRVFLPKRLESADEKD
GVGKAVDEISRRFPDGIPILDPMENMGINDDSFKKLLRKIEVLESRLVANPLHNSPLLVE
LWNQYSLKMQLGEQIKEKKKAIARAHSVAQLDELKSRKRVLRRLGFINDAEVVQMKARVA
CEISSTEGHELLLAELLFNRFFNELSPEICACILSCFIFDEKIETQALKEELAKPFREIQ
AQARIIAKVSAESKLDVNEDEYVQSLKWQLMETVLAWAQGRPFSEICKMTNVYEGSLIRL
FRRLEELLRQMAEAARVMGSEELKDKFELSLSKIRRDIVSFNSLYL
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atggatgacctctttgaggttttcgaggagcagcctcgcgctcagaaaaagcgcaaggcc
tctcccgatgtcgaaatggccgatggagctgccgctgccgctccccccacgatccccaac
ggcgatgccgctgccgctgccgacgatgttcagtcgccacagagcccccatggccagggc
gacaacaagcgcaggaagaagacggacgaggccgagcccatcatgaccgatgccttccaa
acggcagagtcccgagaggtcaccggcgcccagggtttcgcgcccaccgagggcgagtcc
attgttctctcccacaacattcagcatcaggtcgccctgccccccgatttggactacgag
tatatccccttgtccgaacacaagccccccgccgagcccgcgcgaacatactccttcaag
ctcgatcccttccaggccctgtccgtcgcttccattgagcgcgaagagagtgtcctggtg
tccgcgcatacctctgctggtaagacggttgttgccgaatatgctattgctcagtgcctc
aagaagaaccagagagtcatctacacgagtcccatcaaggctctttccaaccaaaagtac
agagattttcaggccgagtttggcgacgtcggcctcatgactggtgacgttaccattaat
cccactgccagctgtctcgtcatgaccaccgagattttgcgctccatgttgtaccgtggt
tccgaaatcatgcgcgaagtcgcctgggtcgtctttgatgaaattcattatatgcgcgac
aagatcagaggtgtcgtctgggaagagaccatcatcttgcttcccgacaaggtcagatat
gtcttcctctccgccaccattcccaatgccttccagttcgccgaatggatcgccaagatc
catcggcaagcctgccacgtcgtctacactgatttccgtcccacgcccttacaaaactac
ttcttccccgctggtggcaagggtatcctcctcattgtcgacgaaaagggcaatttcaag
gagaacaacttcaaccaagcaatggccatgatcgaagagaagaagggcaccgattccaac
gactggagtgccaagcaaaagggcaagggcaagaacaagaagacgaacaagggcggagag
gctgctgatgagaaggcggatatcgcaaagatcatcaaaatgattctcaaaaagaacttc
cagcctgtcatcgtcttcaacttcagcaagagggagtgcgagcagatggccttggccagt
tcttctatgaagttcaacgccccagatgaggaaaacatggtcaacaaggtttttgaaaac
gctcttgcttcgctgtccgaggacgacaagaatctcccccagatctccaacatccttccc
cttttgcgcaagggtatcggtgtgcatcactccggcttgttgcccatcctcaaggagacc
attgagattctgttccaggagggtcttatcaaggtccttttcgccacagaaaccttctct
attggtctgaacatgcctgccagaaccgttgtctttacccaggtcaccaagtgggacggt
cagcaacgccgccctcttacttcctccgagtacatccagatggctggcagagctggtcgt
cgtggtctcgatgaccgcggtatcgttatcatgatggttgacgacaagctcgagcccgag
acggccagagctatcgttgtcggaaatcaggataagctcaactctgccttccatctcggc
tacaacatggtcctcaacctgctccgtattgaggccatttcccccgagtacatgctggag
aggtgtttcttccaattccagaacgctgcgagcgtaccgcagctcgagcgtgagctcatc
agcctgcaacaagagagagacgccatcatcattcctgacgagagcattgtcaaggattat
tacggtgtgcgtcaacaactggaagagtacaacaaggatatggtttttgtcattcagcac
ccccaaaactgtcttggctttttccaggagggccgtcttatccacatcaagagcccaagt
ggagtagactatggttggggtgttttgatcaaacacatccagcgacaaaccccgaagaat
ggccaaccaccttatccagagcaagagtcatacgttttggacgttttgttgaaggtatct
ggcgatttcaaccctaagacccgtggggaggggccgatgcctgagggcattatgcctgca
ggaaaggatagcaagaatgctaggtgggaggttgtcccctgccttttgaactgtctcagg
gcccttggccagctgcgtgttttcttgcccaagaggctagagagcgccgacgagaaggac
ggcgtgggcaaagccgttgacgagatcagccgtcgcttccctgatggcatccctatcctg
gatcctatggagaacatgggcatcaacgacgacagcttcaagaagctgctccgcaagatt
gaggtcctcgagtcgcgtttggtggccaaccctctccacaactctcctctccttgttgaa
ctgtggaaccagtacagcctcaagatgcaacttggcgagcagatcaaggaaaagaaaaag
gccattgcccgggcccacagcgttgcgcagcttgacgagctcaagtctcgcaagcgtgtc
cttcgcagactgggctttatcaacgatgctgaggttgtccagatgaaggcccgtgtcgcg
tgcgagatctcctcgacggagggtcatgagcttcttcttgccgagctgctcttcaaccgc
ttctttaacgagctgagccctgagatctgcgcctgcattctcagctgcttcatcttcgac
gagaagatcgagacacaggcgctcaaggaggagctggctaagcccttccgtgagattcag
gcccaggccaggattatcgccaaggtcagcgcggaaagtaagctggatgtcaatgaggac
gagtacgttcagagtctcaagtggcagcttatggagactgtcctggcttgggctcaggga
aggccgttctccgagatttgcaaaatgaccaacgtctacgaaggctcgctcatccgtctc
ttccgccgtctcgaggagcttctccgccaaatggctgaggccgcccgcgtcatgggcagc
gaagagctcaaggataagtttgagctcagcttgtccaagatcagacgtgacattgtttct
ttcaacagtctgtatctgtaa
DBGET
integrated database retrieval system
