Candidatus Nitrosacidococcus tergens: NSCAC_0171
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Entry
NSCAC_0171 CDS
T06962
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ntg
Candidatus Nitrosacidococcus tergens
Pathway
ntg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ntg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NSCAC_0171 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ntg03019
]
NSCAC_0171 (deaD)
03009 Ribosome biogenesis [BR:
ntg03009
]
NSCAC_0171 (deaD)
Enzymes [BR:
ntg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NSCAC_0171 (deaD)
Messenger RNA biogenesis [BR:
ntg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NSCAC_0171 (deaD)
Ribosome biogenesis [BR:
ntg03009
]
Prokaryotic type
rRNA helicases
NSCAC_0171 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Flavi_DEAD
AAA_22
UvrA_inter
WH_MCM3_C
CoA_binding_2
Rubrerythrin
Motif
Other DBs
NCBI-ProteinID:
CAB1274443
UniProt:
A0A7G1Q7L4
LinkDB
All DBs
Position
1:complement(161337..162869)
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AA seq
510 aa
AA seq
DB search
MSSQVDPTTSFECFSINGLILQALKELKYQNPTLIQTQAIPSFLKGYDLVGQAQTGTGKT
AAFAIPILNQINLHQQNTQALILTPTRELAIQVTEAFRSYAKYLTGFSTFPIYGGQPMGK
QLQQLKYGIQVVVGTPGRVMDHLRRKSLRLDHLTTIVLDEADEMLKMGFIEDVEWILQQI
PHKCQTALFSATMPHSIRNIASKHLNNPQDIKIKQETKTLPEITQRYWLASRLSKLDALS
RILEMEGNSAAIIFVRTKATTEEVAKYLQQHGYTAAALHGDMSQFLREKVIAQLKDSTLN
IVVATDVAARGLDVERIGHVINYDTPYDIETYIHRIGRTGRAGRTGVATLFVTSREQRVL
NTIQKVTKHPIHRINLPSAQQIQEQRIKQFKAKITEILKKEEVSDFRNLVQQWIQQEGFS
ALDIAAALTFSIQGNRPLIDTSIIESEAIAVKVKKKKNLGFNADDRSQREQLRKKKKVQQ
KTGKKHKVYSSTSFKEKKSVAATNLSAVNR
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctcaagtagaccctactacttctttcgagtgtttttccattaacggactcatt
ctgcaagcacttaaggaattaaagtatcaaaatccaactttaattcaaacccaggcaatt
ccctctttcttgaaaggctacgatttagtaggtcaagcacagacaggtactggaaaaacc
gcagcatttgccattcctattttaaatcaaataaatttacaccaacaaaatacgcaagca
ttaattttaacacctacccgtgagttagctattcaagttacagaggctttccgtagttat
gcaaaatacttaacagggtttagtacttttcctatttatggcggacaacctatggggaaa
caattacaacaacttaagtatggcatacaggttgtggttggcaccccaggaagggtgatg
gatcatttacggcgtaaaagtttgcggttagatcatcttactacaattgtacttgatgaa
gctgatgaaatgttgaagatggggtttattgaggatgtagagtggattttacagcagatt
cctcataaatgccaaactgcactcttctctgcaacgatgccccactctattcgtaatata
gcaagtaagcatttaaataatcctcaagatattaaaattaaacaagaaactaaaacactt
ccagaaataactcagcgttattggctggcttctagattatctaagctagatgctttatct
agaattttagaaatggagggaaatagtgcagctattatctttgtacgtactaaagcaact
accgaggaagtagcaaaatacttacagcaacatggctatactgcggcagcacttcatgga
gatatgtctcagtttctaagggagaaagtgatagctcagcttaaagatagtacattaaat
attgtagttgctactgatgtggctgctcgtgggcttgatgtagaacggataggccatgta
attaattatgatactccttatgatattgaaacttatatccaccgcattggacgcactggt
cgtgcaggtagaactggggtagctactctttttgttacttcccgtgaacagagagtatta
aatactattcaaaaagtaactaaacatcctattcataggattaatttacctagcgcccaa
cagattcaagagcagcgtattaaacagtttaaggcaaaaattacggaaatactaaaaaaa
gaagaagtatccgattttcgaaatttagtacaacagtggattcagcaggaagggttttca
gcactagatattgctgcggcattaaccttctctatccagggaaatcgccctttaatagat
acatcaataatagaatctgaagctattgcagttaaagttaaaaagaagaaaaatctagga
tttaatgctgatgatagatcgcaaagagagcaactaagaaaaaagaaaaaggtgcagcaa
aaaacaggaaaaaagcataaagtctactcttcaacctctttcaaagaaaaaaaatccgta
gctgctactaatttatcagctgtaaatagatag
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