Candidatus Nitrosacidococcus tergens: NSCAC_0550
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Entry
NSCAC_0550 CDS
T06962
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ntg
Candidatus Nitrosacidococcus tergens
Brite
KEGG Orthology (KO) [BR:
ntg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ntg03019
]
NSCAC_0550 (hrpA)
Enzymes [BR:
ntg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NSCAC_0550 (hrpA)
Messenger RNA biogenesis [BR:
ntg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NSCAC_0550 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
AAA_22
HA2_C
AAA_19
HA2_N
nSTAND3
ABC_tran
T2SSE
NACHT
AAA_23
ResIII
SLFN-g3_helicase
AAA_25
FtsK_SpoIIIE
AAA_30
AAA_29
Motif
Other DBs
NCBI-ProteinID:
CAB1275205
UniProt:
A0A7G1Q9A6
LinkDB
All DBs
Position
1:complement(539534..543448)
Genome browser
AA seq
1304 aa
AA seq
DB search
MSLNLEQLHALKSKIPYCMGYDQRRLTYRLQQLIKNKPNSEDSQLISIIQAVEQSYFKRE
QRQNNRPTPIFPLGLPITDRRADIKTTIEQHQVTIICGETGSGKTTQLPKICLELNRGIS
RIIGHTQPRRIAARSVAARIAEELASPLGDVVGYKIRFQDRLSPKTYIKLMTDGILLAET
QKDPNLDHYDTLIIDEAHERSLNIDFLLGYLKQILPKRPDLKVIITSATIDTKKFSDHFN
QAPVIEVSGRSYPVEIRYRPLYEETEDKADQDIQQGILAGIKECTKIGLGDILVFLPGER
EIHETTTFLKKHPTLHSDVLPLYGRLSNTAQNQIFNPIQNKRRIILATNVAETSLTVPGI
HYVIDTGLARISRYSTRNKVQQLPIEKISQSSANQRAGRCGRITAGVCIRLYSEVDFQNR
PKFTDPEILRTNLASVILQMKGLKLGDPKDFPFIDPPPTKMINDGLRLLLEIGAVNKNQD
LTKVGKQLIRLPIDPKIGRIVIAGGALHCLKEILIITSGLSIQDPRERPLDQQQAADIAH
TRFVHEQSDFLSYLNIWEEFQNQKNQLSQNKLRTYCHDHFLSYLRLKEWQDTHQQLQDLA
VQLGFSINQIPAEYNVIHQALLAGLLTNIAFKTERADYLGTRNIKLHIFPGSGLFQKAPK
WIMAADLIETTKLYARCVAKIDPQWVEPLASHLLKHSYFNPHWEKNPAQVMADEQVTLYG
LIIIPKRRVHYGPIDTKYSREIFIREALINGEYKTSASFFTHNQELINSIEDLEHKNRRQ
DILVDERVLYQFYEQYIPVDIYSGTRFEHWYQQASKDNPKLLYLTEEMLIRRNVDDITQD
KFPDKITIQGIPLSLSYRFDPSHSEDGVMVTIPVAVLNQLNEEPFQWLVPGLLKEKIIFL
IKSLPKNLRRHFVPVPDFAEYCCQILNFREGNFLEMLANQLRKKAGVSITEKIWEDIHFP
PHLLIGFQLVDEKNRTLAIDQSLAALQKQWGHKTQTHFEKANIYPVQEKITQWNFGDLAE
QVELKEQGLPLIAYPALRDQGNSVSLIVRDSREEAEEITLVGLRRLFMLALDSQIKTLRK
NLPKIQKICLHYTHIPSSPWKDEYLSTQHSCEKLKDEIIKIIIDRTFLINRPLIRNEKEF
TLRQSQYKSDLFLTANEFCHLAAEILNQYHLVIKTISSPSPIGWLVSINDIKAQLTYLIY
HGFISETPLSYLTYFPRYLEAIKLRYTKLKQDPQRDQQRCKEILPLWEAYLKKWKAQHEG
GKVRPELTTYRWMLEEYRVSLFAQELGTSCPISPKRLKSLWEKT
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
gtgagtttaaatctagagcaactccatgctttaaaatcaaaaatcccctactgtatggga
tatgatcagcgtcggctaacttacagattgcagcagcttataaaaaataagccaaactct
gaagattctcagctcatttctattattcaagccgttgagcaatcctattttaaaagagaa
caacgtcaaaataatcgccctactcctatattccctctaggactccctattactgatcgt
agagcagatattaaaactactatcgagcagcatcaagtcacaatcatatgtggtgagaca
ggctctggaaaaacaacacaactccctaaaatttgtctagagcttaaccgggggatctct
aggattattggtcatacccaacctagacggatcgctgctcgaagtgtagcagcacgcata
gctgaggaattggctagtcctctcggagatgtagtaggctataaaatacgctttcaggat
cggcttagccctaaaacttatattaagttaatgactgatgggattttacttgctgaaact
caaaaagatcctaatttagatcattacgataccctgattattgatgaagcccatgagcga
agcctaaatattgattttttattaggctatttaaaacaaatcttacctaagcgacctgat
ttaaaggtgattatcacttcagcgactattgatactaaaaaattctctgatcattttaat
caagcaccagtcattgaagtatcaggtcgaagctacccagtagaaattcgttaccgtcct
ctatatgaagaaactgaagataaagcggatcaagatattcaacaaggaattttagcaggg
attaaagaatgtaccaaaataggattaggtgatattttagtttttctccccggagagcga
gagattcatgaaacaactacctttttaaaaaaacatcctactcttcatagtgatgtgcta
cctctctatggacgattatctaatacagcacaaaatcagatatttaaccctattcaaaat
aagcggcgaatcattttagccactaatgtagctgaaacttctttaacagtacctggtatt
cattatgtaattgatacaggtcttgctcgaattagccgctatagcacaaggaataaagta
caacaacttcccattgagaaaatatcccaatctagtgctaatcaaagggcaggtcgatgc
gggcgtatcaccgcaggagtatgtattcgtctttatagtgaagtggatttccagaatcgc
ccaaagtttactgatcctgaaattttacgcactaatctagcgtcagtgattttacaaatg
aaaggattgaaattaggtgatccaaaagattttccttttatcgatcctcctcctaccaaa
atgattaacgatggtctccgtttattattagagataggagcagttaataaaaatcaagac
ctaactaaagtaggtaaacagcttattcgcttacctatagatcctaaaattggccgtatc
gttattgcgggaggtgcccttcactgccttaaagaaatactgattattactagtggctta
agtattcaagatcctagagaacgtcctttagatcagcaacaagcggcggatatagcccat
actcgctttgttcacgagcaatcagattttctctcttatttaaatatttgggaagagttt
cagaatcaaaaaaatcagctatctcaaaacaaacttcgtacttattgtcatgatcatttt
ctatcttacctgcgcttaaaggaatggcaagatacccatcagcaattacaagatctagca
gtacagcttggtttttctattaatcaaattcctgcggaatataacgtgattcatcaagca
ttattagctggattgcttactaatattgcttttaaaacagaaagagcagattacctaggt
actcgaaatattaaattacatatttttccgggatctggactatttcagaaagcaccaaaa
tggattatggctgcagatctgatagaaaccactaagctctatgctcgctgcgttgctaaa
attgatcctcaatgggttgaacccctcgcctctcatctattaaagcatagttattttaat
ccccattgggaaaagaatcctgcccaagtaatggctgatgaacaagtaactctttatggc
ttaattattatccctaagcggcgagtgcattatggtcctattgatactaaatattctcga
gaaatttttattcgagaagcactcattaacggtgaatataaaacctctgcttcttttttt
actcataatcaagagctaatcaatagtattgaagatctagaacataaaaatagaaggcaa
gacatattagtcgatgagagagtgctataccaattttatgagcaatatattccagtagat
atttatagcggtactcgctttgagcattggtatcaacaggctagtaaagataatcctaaa
ttgctttatttaactgaagaaatgcttattcgccgtaatgtggatgatattactcaagat
aagtttcctgacaaaataacaatccaagggatacctctctcgctgtcttatcgctttgat
cctagtcactctgaagatggcgtgatggtaaccatacctgttgcagtattaaaccaactc
aacgaagagccatttcagtggcttgtacctggattattaaaagaaaaaatcattttttta
ataaaatcactccctaaaaatctacgtcgtcattttgtgcctgttcctgattttgccgaa
tattgctgtcaaatacttaattttagggaagggaattttttagaaatgcttgccaatcaa
ttgcgaaaaaaagcgggagtaagcattacagaaaaaatttgggaggatattcacttccca
cctcatttattgataggctttcaattggtagatgaaaaaaaccgaacattagcgattgat
caaagtttagctgctttacagaaacagtgggggcataaaactcaaactcattttgagaaa
gcaaatatttatcctgtccaagaaaaaattacccaatggaattttggagatctggctgaa
caggttgaacttaaggaacagggattaccacttattgcttatccagcacttcgagatcaa
ggaaattcagtttctttaatagttagggattcaagagaagaagcagaagaaataacctta
gtaggcttaaggcgactcttcatgcttgctttagatagtcaaataaaaacactaagaaaa
aatttaccaaagattcagaaaatatgtttgcactatacccatattccctcttccccatgg
aaagatgaatatctatctactcaacattcttgtgagaagttgaaagatgaaataattaaa
ataatcattgacagaacttttttgataaatcgtcccctaattcgtaatgaaaaagagttt
actctacggcaaagtcaatataaatctgacttatttttaactgcgaatgaattttgtcat
ctagctgcagaaatcttgaatcaatatcaccttgtcataaaaactataagtagtccgtcc
cctataggttggctagtaagtatcaatgatataaaagctcagcttacttatttgatttat
catgggtttatttctgaaacaccactgagttatttaacatattttcctcgctacttagag
gcgataaaacttcgctatactaaattaaagcaggatcctcagagagaccagcagcgatgt
aaagaaattcttcctttatgggaagcttatctcaaaaaatggaaagcccagcatgaaggg
ggaaaagtaaggcctgaattgactacctatcgctggatgcttgaggaatatcgtgtttct
ctttttgctcaagagcttggtacaagttgccctatttctcctaagcggctaaaatctctg
tgggaaaaaacctaa
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