Candidatus Nitrosacidicoccus tergens: NSCAC_1398
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Entry
NSCAC_1398 CDS
T06962
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ntg
Candidatus Nitrosacidicoccus tergens
Pathway
ntg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ntg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NSCAC_1398 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ntg03019
]
NSCAC_1398 (rne)
03009 Ribosome biogenesis [BR:
ntg03009
]
NSCAC_1398 (rne)
Enzymes [BR:
ntg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NSCAC_1398 (rne)
Messenger RNA biogenesis [BR:
ntg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NSCAC_1398 (rne)
Ribosome biogenesis [BR:
ntg03009
]
Prokaryotic type
rRNA processing factors
NSCAC_1398 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAB1276894
UniProt:
A0A7G1QB39
LinkDB
All DBs
Position
1:complement(1434525..1436642)
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AA seq
705 aa
AA seq
DB search
MKKMLINGTHPEELRVAMVNGKKLQDLDIENASRGQKKGNIYKGKITRIEPSLEAVFVDY
GTDRQGFLPLKDISNEYFQSSSGESYPKIQDLLKEGQELIVQIEKEERGNKGAALSTFIS
LAGKYLVLMPNNSKAGGVSRRIEGQERSSLLSALNTLDVPEGIGLIARTAAANKNEKELQ
RDFNYLTHLWQIIKTTAEGKKTPFLIYQESDVIIRALRDHLHLDVDEILIDTPSIYQRAY
DFMCQVIPDEVHKLKLYQDKISLFTRFDIENQVESAFEREVHLSSGGAIVIDYTEALTAI
DVNSARANKGEDIQATALSTNLEAAEEIARQLRIRDLGGLIVIDFIDMAMVHHQRSVEHQ
LKKCLREDRARIQVGRISRFGILEMSRQRLRPSLGDTYQTPCSNCEGKGYIRGTESFALS
ILRHIEEKVTQEKLISIKIQLPVPIASFLLNKKRTLLAAIEKRYGTELSLIPNSRIEAPI
FESEKFKSEEKEEKKKEKINTSLDMKDYGFSFDTVKEDPINVEITKNTSESKEETVLTEI
VPKIPKEDLESNILPFKLKPAPLKTQPEFLIHFWKVFNHEDLGENRVNINEHQNKSKSHY
RNSKKQYRTSSRSEEVIDRNNKEPSESNENYNTSSPKPYHRPRQDRNRYRGRYHRTAASS
KYSQDHKENKTVVQNDIVQQTIEAATDLAIPESDFQHIQKESVVN
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatgttaattaacggaacgcacccggaagagctgcgtgtagccatggtaaat
ggtaagaagttgcaagatttagatattgaaaatgcaagccgagggcaaaaaaagggaaat
atttataaaggaaaaattactcgaattgaacctagtttagaggcagtatttgttgattat
ggtaccgatcggcaaggatttcttcctttaaaagatatatccaatgaatattttcaatct
tcctctggggaaagctatcctaaaattcaagatttattaaaagaaggtcaagaacttatt
gttcaaatagagaaagaggagcgagggaataaaggggcagcactttctacttttattagc
cttgcgggtaaatatttagtattaatgccaaataactcgaaagcaggaggggtttcacgc
cgaattgaagggcaagaacgatccagtcttttatctgccttaaatacactagatgttcct
gaggggatagggctgatcgccagaacagcagcagcaaacaaaaatgaaaaagagctacaa
cgagattttaattatttaactcatctctggcagataattaaaacaaccgcagaaggaaaa
aaaaccccctttcttatctatcaagagagtgatgtaattatccgtgctttacgagatcac
ttacatttagatgtagatgagatactgattgatacccctagtatttaccagcgtgcctat
gactttatgtgccaagttattcctgatgaagtacataaattaaaactttatcaagataaa
atttctctatttactcgcttcgatatcgaaaatcaagtggaatcagcctttgaacgagaa
gttcatttatcttcagggggtgctattgttattgattatacagaggcattaacagcaatt
gatgtgaattctgcccgagctaataaaggggaggatattcaagcaacagcactttcaaca
aacttagaggcagctgaagaaatcgcacgacaattgagaatccgagatttaggagggtta
attgttattgattttatcgatatggcaatggtacatcaccaaagatcggtggaacatcaa
ctaaaaaaatgcttacgagaagatcgagcaaggatacaagtgggtcgtatttccagattt
ggtattctagaaatgtctcgacaacgattacgtccctctctaggggatacctatcaaaca
ccatgttctaactgtgaaggtaaggggtatattcgaggaacagaatccttcgctctatct
atattgcgtcatattgaagaaaaagtaactcaagagaaactaatctctattaaaatacaa
ttacctgttcctattgcctcttttttgcttaataaaaaacgtactctcttagctgcaatt
gaaaagcgatacggtacagagctatctcttattccaaactctcgaattgaggcacctatt
tttgagtctgaaaaatttaaaagcgaggaaaaagaagaaaagaaaaaagaaaaaattaat
acttctcttgatatgaaggattatggattttcatttgatacggttaaagaagatcctata
aacgtagagattactaaaaatacttctgaatctaaagaagaaactgtccttacagaaatc
gttccaaagatacccaaagaagatttagaaagcaatatcctaccttttaagctcaagcct
gctccattaaaaacccagcctgagtttttaattcatttttggaaagtatttaaccatgag
gatttaggagaaaatagagtaaatataaatgagcatcagaataaatctaaatcccactat
agaaatagcaaaaaacaataccgtacctcctctagatcagaggaagtgatagatcgcaat
aataaagaaccatccgaatccaatgaaaattataatacctcttcccctaagccttatcat
cgcccaagacaagatagaaatagatatagaggacgttatcatcgaacagctgcttcaagt
aaatactcgcaagatcataaagaaaacaaaacggtagtccaaaatgatatagtgcaacaa
acgatagaagcagccacggatttagcaatcccagaatcagattttcaacacattcaaaag
gaatctgtagtaaattaa
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