Candidatus Nitrosacidococcus tergens: NSCAC_1622
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Entry
NSCAC_1622 CDS
T06962
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
ntg
Candidatus Nitrosacidococcus tergens
Pathway
ntg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ntg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NSCAC_1622 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ntg03021
]
NSCAC_1622 (rho)
03019 Messenger RNA biogenesis [BR:
ntg03019
]
NSCAC_1622 (rho)
Transcription machinery [BR:
ntg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NSCAC_1622 (rho)
Messenger RNA biogenesis [BR:
ntg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NSCAC_1622 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
FtsK_SpoIIIE
AAA_25
OB_RNB
Mor
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
CAB1277342
UniProt:
A0A7G1QBY3
LinkDB
All DBs
Position
1:1647683..1648939
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AA seq
418 aa
AA seq
DB search
MNLTELKTKSTPEILGIAQSMGLEGMSRLRRQDLIFALLKAHAKNGDDIYGSGVLELLQD
GFGFLRSSSSSYLAGPDDIYVSPSQIRRFGLRTGHTIEGKIRPPKEGERYFALLKINDID
FAPPEQSQDKILFENLTPLFANERLILERGNGSTEDLTPRVIDLIAPIGKGQRGLIVSAP
KSGKTVMLQNIAQSIAANHPECYIIVLLIDERPEEVTEVMRSVKGEVISSTFDEPASRHV
QVSEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVAPSSGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNMEIHLERKLAEKRIYPAINI
SRSGTRREELLTAPDNLQKTWILHKLLAPMDEAEAMEFLLNKLKETKTNASFFDSMKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaactgagcttaaaacaaaaagtacccctgaaatattaggaattgcccaatct
atggggttagagggtatgtctaggttacgccgccaagatcttattttcgctttgcttaaa
gcccatgctaaaaatggagatgatatttacggcagtggtgtgttagagcttcttcaagat
gggtttggatttttacgttcatcaagttcttcctatcttgcagggcctgatgatatttat
gtttccccaagccaaattaggcgatttgggcttcgcactggtcacactattgagggaaag
atacgacctccaaaagagggagaacgttattttgccctactgaaaatcaatgacattgat
tttgctccaccagagcaatctcaagataaaattttatttgagaatctaactcctctcttc
gctaatgagcgattaatactagaaagaggtaacggtagtacagaagatcttacccctaga
gtaatcgatttaattgcacctattggtaagggacaacggggattaattgtttctgcacct
aaatctggtaaaacagtcatgctgcaaaacattgctcagtccattgcagcaaatcaccca
gagtgttatatcattgtcttacttattgatgagcgtccagaagaagttactgaagtgatg
cgttctgtaaaaggtgaagtaatttccagtactttcgacgaacctgcaagccgtcatgtg
caagtctctgaaatggtaattgaaaaagcaaaacgccttgtagagcataagcgagatgta
gtaatcctcttagattcaattactcgattagctcgtgcttacaacacggtggctccatcc
tctggaaaagtgcttacaggtggagtagatgcaaatgctttgcaaagacctaaacgcttt
ttcggggctgcacgtaatttagaagaaggaggaagtttaactattattgcaactgcactt
attgatactggatcacgtatggatgatgtgatttatgaagaattcaaaggtacaggcaat
atggaaattcatcttgaaagaaagttagcagaaaaaaggatttatcctgcaatcaatatt
agccgatcgggtactcgccgagaagaattgcttaccgcaccagataacctacaaaaaaca
tggattttgcataaattacttgcccctatggatgaggctgaagccatggaattcttacta
aataaattaaaagaaactaagacaaatgcatcattctttgattccatgaagcgttaa
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