Niallia tiangongensis: AB3U99_00360
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Entry
AB3U99_00360 CDS
T10881
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ntgc Niallia tiangongensis
Pathway
ntgc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ntgc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB3U99_00360 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ntgc03400
]
AB3U99_00360 (mfd)
Enzymes [BR:
ntgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB3U99_00360 (mfd)
DNA repair and recombination proteins [BR:
ntgc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AB3U99_00360 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
XKB97353
LinkDB
All DBs
Position
69810..73349
Genome browser
AA seq
1179 aa
AA seq
DB search
MLGLKELFKQQEDIQNVISGLEAGLHEQLVSGLSNSARTLYMTSIYEKTKKPLLIVTHNL
LQAQKLYDDITNIVDEKEVFLYPANELIAAEISIASPELKAQRIEVLNYWAKKKSGIMIV
PVAGLRKLLPPKKLWKEAQLKLEIGQDLDLEAFLLKLVHMGYMRSEMVSSPGEFSVRGGI
LDIYPLTEEDPLRIELFDTEIDSIRAFSLEDQRSKEKKEAVSIGPATEILYDEKAVDELL
SKLERGLSQSLKKIKDEATKTLLAQNIGREIEQLRNGQKPEQLYKYLSILYGEHVSLIDY
LPTNGFLIIDEISRVQEMNDTLEKEEADWYTSLLGEGEIIHGLTLSQSISHLLHQAKQPI
VYLSLFLRHVPNTNPQNIINVSCKQMQNFHGQMNVLKTEIERWKKNHYTVLLLGNSEERL
EKLEQVLQDYDMEVMIQKNAKKIAEGKIQLVEGHLQSGFELPILKLAVITEEELFKTKTK
KISKRRQKLSNAERIKSYSELNVGDYVVHVNHGIGKYLGIETLQINGVHKDYLHLRYQGN
DKLYVPVEQIDLVQKYVGSESKEPKIYKLGGNDWKRVKKKVESSVQDIADDLIKLYAERE
ASVGYGFSPDGEIQREFEAAFAYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTE
VAIRAAFKAIADGKQVALLVPTTILAQQHYETLRERFQDYPIEIGLLSRFRTRKQQNDTI
KGLKAGTIDIVVGTHRILSKDISYRDLGLLIIDEEQRFGVTHKEKIKQLKTNVDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNGGLVREAIERELARNGQIYFLY
NRVEDIERKAEEISMLVPDARVTYAHGKMTENELESVMLGFLEGEYDVLVSTTIIETGVD
IPNVNTLIVQDADRMGLSQLYQLRGRVGRSNRVAYAYFTYKKDKVLTEVAEKRLQSIKEF
TELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGTIDEEQKR
TIEIDLDIDAYIPEFYISDGQQKIEMYKRFRGIATLDDMEELREELTDRFGDYPEEVSYL
FKITEMKIYGKQAGVELIKQTKDEVLILLSEQGSDRMDGQKIFEKSSKYGKMIGLGMEGR
KLKMIFHVKGVEKDKWLKACHGMVEALSTFKKEPEEVTK
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgttagggctaaaagagttatttaaacagcaagaagatatacaaaatgtcatttcagga
ttagaggctggattgcatgagcaattagtttcaggtctttccaattcagcacgtacttta
tatatgacttctatttacgaaaaaacgaagaagccgttattaatagtgacacataattta
ttgcaagcacaaaagctatatgatgatattacgaatattgtggatgaaaaggaagtcttc
ctttatccagcgaatgagttaattgccgctgagattagtattgcaagtccagagcttaag
gcacagcgcattgaggtattgaactattgggcgaagaaaaaatcaggaatcatgattgtt
cctgtagctgggctaagaaagctgctgcctccaaaaaagctatggaaggaagcgcaatta
aagcttgagatagggcaggatctagatttagaggcatttttattaaagcttgttcatatg
ggatatatgcgatcagaaatggtttcttcacccggagaatttagtgtgcgtggaggaatt
ttagatatctatccattgacagaagaagatcctcttcgtattgaattatttgatacggaa
attgattcgattagggctttctcactcgaggatcaacgctcaaaggaaaagaaggaagcg
gttagcattgggccggctacagaaattctttatgatgaaaaagcagttgacgaactacta
agtaagctggaaaggggcctatctcaaagtttaaaaaagataaaagatgaagcgactaaa
acattacttgcgcaaaacataggcagagaaatagaacagttaagaaatggacaaaagcca
gaacaattatataaatatttatccattctttatggggaacatgtaagtttaatagattat
ttaccgacaaatggctttttaattattgatgaaattagtagagtgcaagaaatgaacgac
acgctagagaaggaagaggctgattggtatacgagcttattaggcgagggagaaatcatt
catggattaaccttatctcaaagtataagccatcttttacatcaagcaaaacagccaatt
gtctatctatctttgttcttgcggcatgtaccaaatactaatccgcagaatataatcaat
gtttcttgtaaacaaatgcaaaatttccatggtcaaatgaatgttttaaaaacagaaata
gaaagatggaaaaagaatcattacaccgttttattgcttggtaatagtgaggaacgttta
gaaaagctagaacaagttctgcaagattatgatatggaagtaatgattcaaaagaatgcc
aagaagattgctgaagggaaaatccaactagttgaagggcatcttcagtcagggtttgaa
cttcctattttaaagctagctgttataacggaagaggaattatttaaaacaaaaacaaaa
aaaatctctaaaagaagacaaaagctatcaaacgcggagcgaataaaaagctattccgaa
ttaaatgttggggactatgttgttcatgttaaccatggaattggtaaatatcttggaatt
gaaacacttcaaataaatggtgttcacaaggattatttacatttacgatatcaaggaaat
gataagctatacgttcctgttgaacaaatagatttagtgcaaaaatatgtaggatcagag
agtaaagaaccgaaaatatataaattaggcggaaatgattggaagcgcgtaaagaaaaaa
gtagagtcttctgttcaagatatagccgatgatcttatcaagctatatgcggaaagagaa
gcttctgttggctatggattctctccagatggagaaatccagcgggaatttgaagcagca
tttgcttatcaggaaacggaggatcagttgcgttccattcatgagattaaaaaggatatg
gaaagagaaagaccgatggatcgccttctttgcggagatgttggttatgggaaaacagag
gttgctattcgtgcagcttttaaagcaatagctgatggaaagcaagttgctttattagtg
ccaacgacaatcttagctcaacagcattatgagacgttgagagagcgttttcaagattat
ccgattgaaataggtttactaagtagattccggactagaaaacagcaaaacgatacaata
aaagggctaaaagctggaactattgatattgttgtaggaacacatcgaattttatctaaa
gatatttcctatcgggacttagggttgttaattattgatgaagaacagcgatttggggta
acgcataaggagaaaattaaacagttaaaaacaaatgttgatgtgttgacattaacagca
acaccaattccaagaacactccatatgtctatgctaggtgttcgagatttatctgttatc
gaaacacctcctgaaaatagatttcctattcaaacctatgtaatggagtataacggagga
cttgtaagagaagcgattgaaagagagcttgcgagaaatgggcaaatttattttctatat
aatcgtgtagaagatattgaaagaaaagcagaagagatatccatgttagtccctgatgca
agggtaacgtatgcacacggtaaaatgacggaaaatgaattagaatcagtaatgcttgga
tttttagaaggagaatatgatgttttagtcagtacaacaattattgaaacaggggtagat
attccgaatgtaaatacattgattgtccaagatgcagatcggatggggctatcgcagctc
tatcaattacggggaagagtagggcgttctaatcgagtagcctatgcttactttacgtat
aagaaggataaagtcttaacagaggtggcggaaaaaaggctacagtcaattaaagagttt
acagagttagggtctggttttaaaattgccatgcgggatttaacgattcgtggggctgga
aaccttctaggtgcccagcagcatggatttattgattctgttggatttgatttatactct
caaatgctgaaagaagcgattgaagagagaagaggaacaatagatgaagaacaaaaacga
acaatcgaaattgatttagatatcgatgcctatattcctgagttctatataagcgacgga
cagcaaaagattgaaatgtataaaagatttagaggcattgcaaccttagatgatatggaa
gaactaagagaagaattaacagaccgttttggagactatccagaggaagtttcttatctt
ttcaagattacagaaatgaagatttatgggaagcaagcgggagtagaattaattaaacaa
acaaaggatgaagtgctgattctattatcagaacaaggtagtgatcgcatggatggccaa
aaaatatttgagaaaagctctaaatacggcaaaatgatcggtcttggcatggaaggaaga
aaactaaaaatgatcttccacgtaaaaggcgtagaaaaggacaaatggctaaaggcatgt
catggaatggtagaagcattgagtacctttaaaaaagaaccagaggaagttactaagtaa
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integrated database retrieval system
