Niallia tiangongensis: AB3U99_02480
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Entry
AB3U99_02480 CDS
T10881
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ntgc Niallia tiangongensis
Pathway
ntgc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ntgc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB3U99_02480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ntgc03019
]
AB3U99_02480
Messenger RNA biogenesis [BR:
ntgc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB3U99_02480
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
XKB97716
LinkDB
All DBs
Position
479127..480800
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AA seq
557 aa
AA seq
DB search
MKVTENALSFFALGGINEIGKNMYVVQYEDEIFIIDCGGKFPDESLLGIDLIIPDITYLE
ENKDKIKALLITHGHEDHIGGIPYFLRKLNVPIYATHFTLGLIELKIDEHRLRGDTKLIT
IDSNSKLEFGQVQVSFFKVSHSIPDCLGIVFHTAEGNVVHTGDFKFDLTPANNQFADIHK
MAEIGQQGVLALISESTNAERKGMTPSEQMVGSHMDEAFIKATGKIFISTFASNVNRIQQ
VVESAMKTNRKIALLGRSMVNIVNVAIERGYLNMPEGMLIDASEIDKLPPEKVAILCTGS
QGEPMAALSRLASGNFRDVSIYPGDTVILAASPIPGNEKDVSKIIDNLFQLGAKVIYGSG
STTGMHVSGHGYQEDLKLMLTLMKPTYFVPIHGEFRMLHHHQILAESVGVKRENTFIIKN
GEVLDIKNGVAFQTRSIPAGDTYVDGMGVGDVGDIVLRDRKQLSEDGMLVVVITISKVDR
KLISGPDTITRGFVYARNADELLKEVNRLAKKAVNDLQSENIRQWNVMKQNIKKSVGQYL
FNQTKRKPMILPIIIEI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcactgaaaatgctttgtctttctttgctctaggcggtataaatgaaattgga
aaaaatatgtatgtggttcaatatgaggacgagatttttatcattgattgtggcggtaaa
tttcctgatgaaagcttactggggattgatttaattattcctgatataacttatttagaa
gagaataaggataaaatcaaggctttacttattacccatggtcacgaagaccatataggt
ggtattccttatttcctaagaaaattaaatgttccaatttatgctacgcatttcacccta
ggtttaatagaattaaaaatcgacgagcataggttaagaggagatactaaattaattacc
atagactccaattcaaagttggaatttggacaagttcaagtttctttttttaaagtgagt
catagtatacctgactgtcttggaattgtttttcatacggcagaaggaaatgttgtccac
actggtgattttaagtttgacttaacaccagccaataaccaatttgccgatatacataag
atggcagaaatcggccagcagggagttttagctttaatatctgaaagtaccaacgcagag
cgtaaaggaatgactccttctgaacaaatggtaggatcccatatggacgaagcctttata
aaggcaaccggcaaaattttcatttctacatttgcatcgaatgttaatcgaattcagcaa
gtagtggaatctgcaatgaaaacaaatcgaaaaatagctttgcttggtcgcagtatggtg
aatattgtgaatgtagctattgaacgtgggtatcttaatatgccagagggaatgttaatc
gatgccagcgaaatagataaactcccaccagaaaaagttgctattctgtgtacaggaagt
caaggcgagccgatggcagctttatcacggttagcaagtggtaactttcgcgatgtttcc
atttatcctggggatacggttattttagcagcatccccaatccccggaaacgaaaaagat
gtttcgaaaatcatagataatttatttcaactcggtgctaaagtaatttatggttccggc
agtacgactggaatgcacgtttctggtcacggctatcaagaagacctaaagcttatgtta
accttaatgaaaccgacttattttgtgccgattcatggtgaattccgtatgcttcatcat
catcagatattagctgaatcagttggagtgaaaagggaaaatacctttattattaaaaat
ggggaagtccttgatatcaaaaatggggtggcttttcagactcgctctattccagcgggg
gatacgtatgtagatggaatgggtgttggcgatgttggagatattgtattacgtgataga
aagcaactatcagaggatgggatgcttgttgtcgttatcacgattagcaaggtagatagg
aagcttatttccggacctgatacgattacccggggatttgtttacgcccgtaacgcagat
gagctactaaaagaagtaaatcgtttggcgaaaaaggctgtgaacgacttgcaatcagag
aatatccggcaatggaatgtaatgaaacaaaacataaaaaaatcagttggacagtatcta
tttaatcaaacgaagagaaagccgatgattcttccaattattattgagatttag
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