Niallia tiangongensis: AB3U99_19130
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Entry
AB3U99_19130 CDS
T10881
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ntgc Niallia tiangongensis
Pathway
ntgc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ntgc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB3U99_19130 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ntgc03019
]
AB3U99_19130 (rnr)
03016 Transfer RNA biogenesis [BR:
ntgc03016
]
AB3U99_19130 (rnr)
Enzymes [BR:
ntgc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AB3U99_19130 (rnr)
Messenger RNA biogenesis [BR:
ntgc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB3U99_19130 (rnr)
Transfer RNA biogenesis [BR:
ntgc03016
]
Prokaryotic type
tRNA degradation factors
AB3U99_19130 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
S1_RRP5
OB_RNR_1st
OB_Dis3
DEK_C
MarR_2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
XKB96306
LinkDB
All DBs
Position
complement(3983445..3985787)
Genome browser
AA seq
780 aa
AA seq
DB search
MEDIIKENVEKLLTYMKDEAYKPLTVQELEEAFGIEDSSHFKDFVKALVQMEEKGLVVRT
RSNRYGLPEKMNLIRGKLAGHAKGFAFVIPEEQGMDDIFIPPNEVKTALNGDIVLARVTS
ESSGQRREGTIVRIIERGVQQIVGTYSESKHFGFVIPDDKKIATDIFIPRGSTKGAIEGH
KVVVKLTSYPEGRKNAEGEVIKILGHKNDPGVDILSVIHKHGLPLAFPENVLDQANNAPD
TIDEKEIANRRDLRNETIVTIDGADAKDLDDAVTVTILENGHYKLGVHIADVTYYVTENT
PIDVEAEERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEITPDGEVVKHEI
FQSVIKTTERMTYADVNSILHEKDEELRAKYEGLVPMFERMEELAAILRKKRMTRGAIDF
DFKESKVLVDEDGKPQDVILRERSVAEKLIEEFMLVANETVAEHFHWMQVPFIYRIHEDP
KEEKLRRFFEFITNFGYIVKGTANSVHPRALQEIIEEVQGTPEEMVISTVMLRSMQQAKY
YPESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLIEGDISSTTQEKWNSRLTEIAE
HSSSMERRSVEAERETDELKKSEYMLDKIGEEYDGIISSVTNFGMFVELTNTIEGLVHVS
YMTDDYYRYDERHFAMIGERTGKVFRIGDEITVRVVNVNKDERAIDFEIVGMKGTRRRDP
KKDGKVFSTGSVSRAPRKGKSDRDRDTDRKGKPGESRRKGKNDRKHFENAPKAKRKKKKR
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
ttggaagatataatcaaggaaaatgtcgagaagttattaacctatatgaaagatgaagcc
tataaaccattaacagtacaagaattagaagaggcttttggaatagaggattcttctcac
tttaaagacttcgtgaaggcgcttgttcagatggaagagaagggacttgttgttcgtaca
agaagcaatcgttacggtttaccggaaaaaatgaatcttattcgaggaaaacttgcaggt
catgcaaaagggtttgcgtttgttattccagaagaacaaggcatggatgatatctttatt
cccccaaatgaagtaaaaacagcgttaaatggagatattgttttagcacgggtaacttct
gagagctctggtcaaagaagagaaggtacaatcgtccggattattgaaagaggcgtacag
caaatagttggtacctattcggaaagtaagcattttggctttgtgatacctgatgataaa
aagatcgcaaccgatatttttatcccaagaggcagtacaaaaggggctatcgaagggcat
aaagtagttgttaaactaacttcctatccagaaggcagaaagaatgcagaaggggaagtt
atcaaaatactaggacataagaatgacccaggtgttgatattttatcggtaatacataag
catggattaccactagctttcccggaaaatgtactagatcaagcgaataatgctccagat
acgatagatgaaaaggaaattgcaaacagacgagatttgcgtaatgaaacaattgtcact
attgatggtgcagacgcaaaagatttggatgatgcggttactgttactattttagaaaac
ggtcattataaactaggggttcatattgcagatgttacttactatgtaacagaaaatact
cctattgatgtagaagcagaggagagaggaacgagtgtttacttagtagaccgagtgatt
ccaatgattccacatcgtttatctaatggaatatgttccttaaatcctaaagtagatcgc
ttgactctttcctgtgagatggaaattacgccagatggtgaagtagtgaagcatgaaatt
tttcaaagtgttattaagacaacagagcgcatgacttatgcagatgtgaattccatatta
catgaaaaagatgaagaattgagagccaaatatgaaggacttgtgccaatgtttgagcgt
atggaagagcttgcggcaatccttcgtaaaaaacgtatgacccgtggtgccattgacttt
gactttaaagaatcaaaggtccttgtggatgaggatggaaagccacaggatgttatttta
cgagaacgttctgttgcggaaaaactgatagaagagtttatgctagttgctaatgaaaca
gttgcagaacatttccattggatgcaggttccgtttatctaccgtattcacgaagatcca
aaagaagaaaaactaagaagattcttcgagtttattacaaactttggctatattgtaaag
gggactgcaaattctgtacatcctagagcgttacaagaaataattgaagaagttcagggg
acccctgaagagatggttatttctacggtaatgctgcgttccatgcaacaggcgaagtac
taccctgagagcctagggcattttggtctatcaacggaattctatacgcattttacttca
cctattagacgctatccagatttaatcgtacaccgtttgattcgtacgtatttaattgaa
ggagatatcagttccacgacacaagaaaaatggaatagccgcttaacagaaatagcagag
cactcttctagtatggaaagaagatcggtagaagctgagcgtgaaacagatgagttgaag
aaatcagagtacatgcttgataaaattggtgaggaatatgatggtattattagctccgtt
acgaattttggaatgtttgtagagcttacaaatacaatcgaaggacttgtccatgtcagc
tatatgaccgatgactactatcgttatgatgaacgtcattttgcaatgattggcgaaaga
accggaaaagtcttccgtattggagacgaaattacggtgcgtgtcgtaaatgtaaataaa
gatgaacgtgcaatcgactttgaaattgtcggcatgaagggaacacgccgcagagatcca
aagaaagacggcaaggtattctccactggtagtgtctctcgtgcaccgcgcaaaggtaaa
tcagatagagatagagatacggatcgtaaaggaaaacctggagaatcccgacgaaaagga
aagaatgatagaaaacacttcgagaatgcaccaaaagcaaagagaaagaaaaagaagcgt
taa
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