Natranaerobius thermophilus: Nther_0067
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Entry
Nther_0067 CDS
T00761
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nth
Natranaerobius thermophilus
Pathway
nth03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Nther_0067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nth03400
]
Nther_0067
Enzymes [BR:
nth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Nther_0067
DNA repair and recombination proteins [BR:
nth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Nther_0067
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
AAA_22
AAA_30
IstB_IS21
Chlamy_scaf
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
ACB83666
UniProt:
B2A3P0
LinkDB
All DBs
Position
81091..84681
Genome browser
AA seq
1196 aa
AA seq
DB search
MSYLVDIIPYENSLQNIIEDFSPRRKRSTKQMVSGISGSEFPLILAGLFRAYGRPITLIT
YDNYRAESLYSDLVTLLDKEQVYIYPEHQVYPFELAWQSRDVNNERAQVLQAMLSKKSAV
YIFSLKSAKEKLSPAQVVKQTFLNLEVGNEKLSPTMIAEKLTGLGYENTSMVEQKGQFSH
RGGIIDVFPVASELPVRIEFFDDEIESIRAFDLATQRSLKEYNSLVVGPGSQLVIGDNTN
LSQALNQLTREFELQKGKLMKDGITDRSEELEERINRDLSSLENGISLPHFHRYLSYFYP
KNYGTIIDFLPTNSLFWVDEPNRIKESDEFYNNEITELAESLIEEGKILPGESNLFYSIE
DVLSGNPFDTIYSANFLRQNPFENVSQATNMSVKSMNQFYGQWDFFLKEMKQWMNNNYRI
ILFSPTPESARTLYENLKKEEIGATIVEKGNTKTENQVVIAVGDLKSGFILQESKLAVIT
YGDLWGHQKKKIRSRKRDKSEDKAVKVSDYRELQVEDYVVHEKHGIGKYMGIKTLEVGGL
YKDYLHIKYAGNDSLYVPTEQIDEIQKYVGKEGKPPKLYSLGSSEWQKVKQRVKSSVKEL
AEDLLKLYAERSSRKGYAFSQDTPWQKEFEDYFPYELTPDQKKAISEIKEDLESEQPMDR
LLCGDVGYGKTEVAMRAAFKAVMEGKQVCVLVPTTILAQQHFQTFKERFAPYPVDIRVIS
RFSSQKDEKLVKEEMKEGNAEIIIGTHKLLNKSVKFRDLGLLIIDEEQRFGVQHKEKIKM
LKKNLDVLTMTATPIPRTLHMSLVGVRDLSVIETPPEGRFPVQTYVMEHSPQLIREAVNR
EISREGQVYVVHNRVKGINKVAKEVADWVPDAKVGVAHGQMPEKQLERVMLDFYEGKYDV
LVSTSIVEAGLDIQNVNTIIIYNADRMGLSQPYQLRGRVGRSNRMAYAYLTYQKDKVLTQ
EAEKRLKAIKEFTELGSGFKLALRDLEIRGAGNILGPEQHGHIMAVGFDMYTKMLKDAIK
EISQESQTQEETTKIQDDKTEVEKPEEVKVELNINAYLPTTYISDHEQKITIYKKARSIN
SYSEANDLETELKDRFGSLPQEVKNLLDITRLKVLARETGIISITRQGYWVHLDLDPRQK
ISGENLIKLTTKFPGKITVSSQTDGLTLKVNVKNLKDSGLMDMINKVAESLLELVA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgagctatttggttgacataattccttatgaaaatagtttacaaaatattattgaagat
ttttctcctaggcgtaagcggagtactaagcagatggtatcaggtattagcggaagtgaa
tttccattaatactggcaggattgtttagagcttatggccggccaatcactctaataaca
tatgataattacagagcggaaagcttatattcagatttagttacactgttggacaaagaa
caagtttatatctatccggagcatcaagtatatccttttgaactagcctggcaaagtaga
gatgtaaataacgaaagagcccaggtcctacaagctatgttaagtaaaaaatctgctgtt
tatatattttcattgaagtctgctaaagaaaagctatctcccgctcaagttgtaaaacag
acatttcttaaccttgaagttgggaatgaaaagctttctccaactatgattgcagaaaaa
cttacaggattaggttatgaaaatacttctatggttgaacaaaaggggcagtttagtcat
agaggaggcatcattgatgttttccctgtggcaagcgaactacctgtccgaatagagttt
tttgatgacgagatagagtcaattagagcttttgacctagcaactcaacgatctttaaaa
gagtataatagcctggtagttggaccaggaagtcagcttgtaataggagataatactaat
ttatctcaggcattgaatcaactgactcgtgaatttgagctacaaaaaggtaaattaatg
aaagatggaattactgatcgatccgaggaattagaagagaggatcaacagggatttaagt
tccttagaaaacgggatctcattacctcattttcatagatatttatcttatttttaccca
aaaaattatggtacgataatagattttttaccaacaaactctttgttttgggttgatgag
cctaataggattaaagaaagtgacgagttttataataatgaaataacagaattagcggaa
tctctaattgaagaaggtaaaattcttcctggagaaagtaatttattttattctattgaa
gatgtgttgtcaggaaacccctttgatacaatttattctgctaattttttacgccagaat
ccatttgaaaatgtgtcccaggctactaatatgtcagttaagtcaatgaatcagttttat
ggtcagtgggatttttttctaaaagaaatgaaacagtggatgaataacaattatcgcatc
atcttgttttcacctaccccggaaagtgctagaacattatatgaaaatttaaagaaggaa
gaaatcggtgcgactattgtggagaagggtaatactaaaacagaaaatcaagttgttatt
gctgtaggagatttaaaaagtggttttatattacaggaaagtaaattagcggtaattact
tatggagatttatggggacatcaaaagaagaaaatacgtagcagaaaacgtgataagtca
gaagataaagcagtgaaagtatctgattatcgtgaacttcaagttgaagattatgtagtt
catgaaaaacatggaatcggcaagtatatgggaataaaaacgttagaagtcggtggcttg
tataaagactatctccatatcaaatatgccgggaatgacagcctgtatgttcccacagaa
caaattgatgagattcaaaaatatgttggtaaggaaggaaaacctcctaagctttattct
ctaggaagtagtgaatggcaaaaagtaaaacaaagagtaaaatcttcagtcaaagagttg
gcagaggatttattaaaattatatgccgaacgaagttcgcgtaagggatacgcatttagc
caggacacaccatggcaaaaagagtttgaagattatttcccttatgagctaactccggac
caaaaaaaggccatttctgagatcaaggaggatttagaatctgaacaacctatggacaga
ttattatgtggggatgtagggtacgggaaaacagaagtagcaatgagagcagccttcaaa
gctgtcatggaggggaaacaagtctgtgtcttagtaccaacaaccattttagcacaacaa
catttccaaacttttaaagagaggtttgcaccatatcctgttgatattcgtgttataagc
cgttttagtagtcaaaaggatgagaaactagttaaagaagaaatgaaagaaggcaatgct
gagattatcattggaacacataaactgttaaataaatcagtcaaatttagagacttaggt
ttattaataatagacgaagaacagcgatttggagttcaacataaagaaaaaattaaaatg
cttaaaaagaatttagatgtgttgactatgacagctacgccaattccaagaactttgcat
atgtctttagttggagttagagatttaagtgtgattgaaactcctccggaaggacgcttt
cctgtacaaacttatgttatggaacattctcctcaattaattagagaagccgttaacagg
gaaattagccgagaaggccaggtttatgttgttcataacagagtgaagggtataaataaa
gtagcaaaggaagtagctgattgggtgcctgatgccaaagtaggtgttgctcatggtcag
atgcccgaaaaacaattggaacgagttatgttagacttttacgaaggtaaatatgatgta
ctagtgtctacttccatagtagaagctggattagacattcaaaatgttaatacaatcata
atttataatgcagatcgtatgggcttaagccagccataccagttaaggggccgagtagga
agaagtaatcgaatggcatatgcatatttaacttatcagaaagataaagtattaacacaa
gaagcagaaaaacgcttaaaagcaatcaaagagtttacagaactggggtctggttttaag
ctcgctttacgtgacttagaaattcggggagcaggcaatatactagggccagaacaacat
ggacatattatggccgtaggttttgatatgtacacaaaaatgctgaaagatgctattaaa
gaaatttctcaggaaagtcaaactcaagaagaaaccaccaagattcaagatgacaaaact
gaagttgaaaaaccagaagaagtaaaagtggagttgaatattaatgcttatttaccaaca
acttatatttctgatcatgaacaaaagataactatttacaaaaaagcaagaagtattaac
tcctatagtgaagctaatgacttggaaacggagttaaaagaccgatttggttcattacct
caagaagttaaaaacttgctagatattactcgcctgaaagttcttgcccgggaaacaggt
atcatttctattaccaggcaaggctattgggtacacttggacttagatcctcgtcagaaa
attagtggggaaaatttaataaaattaactacaaaattccctgggaaaatcacagtttct
tctcaaacagatggattaaccttaaaagtaaacgttaaaaacttaaaagattcgggttta
atggacatgatcaataaagttgccgaatctttgctagagttggtagcgtaa
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