Nitrospira tepida: DNFV4_00170
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Entry
DNFV4_00170 CDS
T09383
Name
(GenBank) Transcriptional regulator, AraC family
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
nti
Nitrospira tepida
Pathway
nti03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DNFV4_00170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nti03000
]
DNFV4_00170
03400 DNA repair and recombination proteins [BR:
nti03400
]
DNFV4_00170
Enzymes [BR:
nti01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
DNFV4_00170
Transcription factors [BR:
nti03000
]
Prokaryotic type
Helix-turn-helix
AraC family
DNFV4_00170
DNA repair and recombination proteins [BR:
nti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DNFV4_00170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
CAI4029752
UniProt:
A0AA86T3T5
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All DBs
Position
NsDNF:159892..161253
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AA seq
453 aa
AA seq
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MTLDAATCYRALRARDARFDGRFFVAVSSTRIYCRPICTVKPPRPEHCRFYPSAAAAEVA
GFRPCLRCRPELAPGNASVDATTRVAQAAASLIEDRTLEAEGLAAIAGRLGITDRHLRRA
FSAEFGVSPIEFAQTQRLLLAKRLLTDTGLPVTEIAFASGFGSVRRFNALFKQRYRLQPA
QLRRRLNGEAVHIGDVLNFELSFRPPYDWPAVSAFLGARAIAGVEMFEGTCYRRTARIAS
AGQDYFGWIEVGLSANKPALRVAVSASLALVLPPVLSRVKALMDLSCNPAEVAAALGRLA
SRRPGLRVPGAFDGFEVAVRAILGQQVAVAAARTLAGRFAAALGDPIETPFAALTIVFPT
AARVADGDLMLLPNADLDATLERLRALQGVGEWTAQYIAMRALAWPDAYPHTDLGVMRAL
GERDARRVLEAGEAWRPWRAYAVMHLWNAMTQE
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcgatgccgctacctgctaccgggctctgcgggcgcgcgatgcgcgcttcgac
ggacgattcttcgtcgccgtgtcgtccacgcgcatctactgccgtcccatctgcacggtg
aagccgccgcggcccgagcactgccgtttctatccgagcgccgccgcggctgaagtggcc
ggctttcggccctgcctgcgctgccggcccgagctggcgccgggcaatgccagcgtggac
gcgacgacgcgcgtggcccaggctgcggccagcttgatcgaagaccggacgctcgaggct
gaagggctggcggccatcgcggggcgcctcggcattaccgaccggcacttgcggcgcgca
ttcagcgccgagttcggcgtatcgccgatcgagtttgcgcaaacccaacgtctgctcctt
gcgaagcgcctgctcaccgacaccggcctgccggtcacggaaattgcgttcgccagcggc
ttcggcagcgtacggcgcttcaacgccctgttcaaacagcgctatcgcctgcagcctgca
cagttgcgccggcgcctgaacggcgaggccgtacatattggcgacgtcttgaacttcgaa
ctgagcttccgcccaccctatgattggccggcggtcagtgcgtttcttggcgcgcgggcg
attgccggcgtcgagatgttcgagggaacctgctaccggcggacggcgcgcatagcatcg
gcgggtcaggattacttcgggtggatagaggtagggttgtcggcgaataagccggcattg
cgggtcgctgtgtctgcgtcgctcgctttggtgctgccgccggtgctctcgcgggtcaag
gcgctcatggacctgtcctgcaatccggctgaggtggcggcggcgctgggccggttggca
tcgcgccgtcccggtctgcgcgtccccggagcgttcgacggattcgaagtggcggtgcgc
gcgattcttggacaacaagtcgcggtggccgcggcgcggacgctggctggccgctttgcg
gccgcgctcggcgatccgatcgagacgccgtttgctgcgctcacgatagtatttcccacc
gcggcgcgcgtggccgacggcgacctcatgctgctgcccaacgccgatctcgacgccacg
ctggagcgattgcgcgcgctgcagggcgtcggcgagtggacggcgcagtacatcgccatg
cgggcgctcgcctggcccgatgcgtatccccacacggatctcggcgtgatgagagcgctg
ggcgagagggatgcgcgccgcgtcctcgaagccggtgaagcctggcggccatggcgcgct
tatgccgtgatgcacctctggaatgcaatgacacaggagtga
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