Nitrospira tepida: DNFV4_03560
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Entry
DNFV4_03560 CDS
T09383
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nti
Nitrospira tepida
Pathway
nti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DNFV4_03560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nti03019
]
DNFV4_03560
Enzymes [BR:
nti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DNFV4_03560
Messenger RNA biogenesis [BR:
nti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DNFV4_03560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CAI4033127
UniProt:
A0AA86N1R7
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All DBs
Position
NsDNF:complement(3639608..3641146)
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AA seq
512 aa
AA seq
DB search
MLTSASSVSTPVPSTSDEAIAPAQPAQDGTVTFRSLGLSDALLRELAQAKFTDPTPIQAK
AIPPGLAGRDVLGCAQTGTGKTAAFVIPMIERLAGGPAGPPRGLILTPTRELAFQIQRAI
GLLGRSRRVSATALVGGEDLRIQVRGLHQRPTIVVATPGRLLDHMWNGTVNLAYFTIVVL
DEADRMLDMGFAPQLNQILDALSPERQTMLFSATMPDNLDGLARAGLKNPVQVMVNPPAT
AAHTVTHEVHHTTHDDKINLLLNLIQDPAGSVLVFTRTKHRADRLGTALEHKGHRVAVLH
AGRRLSQRRAALEGFRRGTYRILVATDIAARGIDVANIGHVVNFDLPNTPEDYVHRIGRT
GRMKAIGRATSFVTGEDHFQLRAIEKLLGRPVPRAAGSPAPHSHGPSSGRGPAHRGGGRP
GYGAGGSRRHDGHQTGESHRRGDGQHRREFSRPVEGNRFADAGRTGQPQHKGFPQQGQMH
QDHAPRPHAHAADLNHQARRPRRLFMQPKNGN
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
gtgttgacttctgcttcttccgtttctacccctgtgccctccacctctgacgaagcgatc
gcgccggcccaaccggcgcaggacggaacggtgacgttccgctcgctgggactttccgac
gccctgttgcgggagttggcccaggcgaaattcacggacccgacgcccattcaggccaag
gccattccccctgggctggccggccgcgacgtgctcggctgtgcccagaccggaaccggc
aagacggccgcgttcgtgattcccatgatcgaacgattggccggcgggccggccggcccg
ccgcgcgggttgatcctgaccccgacccgggagctggcgtttcaaattcaacgggcgatc
gggttgctcgggcgcagccgccgggtttccgcgacggccttggtcggaggcgaagacctc
cgcattcaggtgcgcgggctgcaccaacgcccgacgatcgtggtggcgacgcccggccgc
ttgctcgatcacatgtggaacgggacggtgaacctggcctatttcacgatcgtggtcctg
gatgaagcggaccgcatgctcgacatgggcttcgcgccgcagctcaaccagattctggat
gccttgtctccggaacggcagacaatgctgttctccgcgaccatgccggacaatctcgac
gggttggcgcgggcggggttgaagaatcccgtgcaggtgatggtcaatccgccggccacg
gcggcgcacacggtcacccacgaggtgcaccatacgacgcacgacgacaagatcaacctg
ctcttgaacttgattcaggacccggctggcagcgtgctcgtcttcacgcgcaccaaacat
cgggcggatcggctgggaaccgccttggagcacaagggccaccgggtggcggtgctgcat
gcgggacggcgtctctcgcagcgtcgcgcggcgctggaaggcttccggcgcgggacctat
cgcattctcgtggcgaccgatatcgcggcgcgcgggatcgacgtggcgaacatcggccat
gtggtcaatttcgacctgccgaatacgccggaagactatgttcaccggatcgggcggacc
ggccgcatgaaggcgatcgggcgcgccaccagcttcgtcaccggtgaagaccacttccag
cttcgggcgatcgagaagctgctcggcagaccggtaccccgcgcggcgggaagtccggcg
ccccactcccacgggcccagttccggccgtggccccgctcatcgagggggcggccgtccc
ggttatggagccggcggatcgagaaggcacgacgggcatcagacgggtgaatcgcaccgt
cgcggtgacggtcagcatcgccgcgagttcagccggccggttgaggggaaccgatttgcc
gacgccggtcgaacgggccagccacagcacaaggggtttccgcagcagggccagatgcat
caagatcacgcgccgcggccccatgcgcatgcggcagatctgaaccatcaggccaggcgg
ccccgccggctgttcatgcagccgaagaacgggaactga
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