Nitrospira tepida: DNFV4_03819
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Entry
DNFV4_03819 CDS
T09383
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
nti
Nitrospira tepida
Pathway
nti03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DNFV4_03819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nti03400
]
DNFV4_03819
Enzymes [BR:
nti01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DNFV4_03819
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DNFV4_03819
DNA repair and recombination proteins [BR:
nti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DNFV4_03819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
NFACT_N
zf-FPG_IleRS
Ribosomal_S13
HTH_28
Zn_ribbon_TFIIB
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
CAI4033383
UniProt:
A0AA86N228
LinkDB
All DBs
Position
NsDNF:3890793..3891704
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AA seq
303 aa
AA seq
DB search
MPELPDLTIYCEALERVAVGHRLLHITLASPFLLRTVEPSLAETEGKLLRAVRLIGKRLV
FELEDELFLLLHLMIAGRLHRKPAGAKVPGRIGLAAFEFAEGTLLLTEAGSKKRAALHVV
RGLAGLDQFRSGGIEPLEADLAAFQAALARENHTLKRALTDPRLFSGIGNAYSDEILHRA
RLSPAKLTSTLSPEEIVRLFEATQSTLREWIVRLREETGDRFPESVTAFRADMAVHGRYR
QPCPICGTPIQRIRYAENECNYCATCQTGGKLLADRGLSRLLGADWPRTVEQLELHKTTS
RST
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcccgatttgaccatctattgcgaggcactggagcgtgttgcagtaggg
catcggctgctgcatatcacgctcgcgagtccctttttgctccgcactgtcgagccgtcg
ctggcagaaaccgaaggcaagctgctgcgagccgtccgactgatcggcaaacggctggtc
ttcgagctggaggacgaactctttctcctgctccatctgatgatcgccgggcgcctgcat
cggaaaccggccggggccaaggtccccggcaggatcggcttggctgcatttgagtttgcc
gagggcacgttgctcctgaccgaggccggcagcaagaagcgcgcggcgttacacgtggtc
cgaggcttggccggcttggaccagtttcgttcgggcggcatcgagccgctggaggcggat
cttgcggcttttcaggcggccctcgcccgcgagaaccatacgctcaagcgggccctgacc
gatccccggctattcagcggcatcggtaacgcctattccgacgagatcctgcatcgcgcc
cgcttgtctccggcgaaactcacatcgaccctctccccggaggagatcgttcgtctgttc
gaggccactcaatcgaccttgcgggagtggatcgtccgcctgcgtgaagagaccggcgac
cggttcccggaatccgtgaccgcgtttcgagcagacatggccgtgcatggccgttatcgg
caaccctgccccatctgcggtacgccgatccaacgcatccgctacgcagagaatgagtgc
aactactgcgcgacctgccaaaccggaggcaagctgctggcggatcgaggcctctcccgg
ttgcttggggccgattggcctcggactgtggagcaactcgaactccacaagaccacatca
cgatcgacttga
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