Nitrospira tepida: DNFV4_04116
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Entry
DNFV4_04116 CDS
T09383
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nti
Nitrospira tepida
Pathway
nti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DNFV4_04116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nti03019
]
DNFV4_04116
03016 Transfer RNA biogenesis [BR:
nti03016
]
DNFV4_04116
Enzymes [BR:
nti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DNFV4_04116
Messenger RNA biogenesis [BR:
nti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DNFV4_04116
Transfer RNA biogenesis [BR:
nti03016
]
Prokaryotic type
tRNA degradation factors
DNFV4_04116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
Motif
Other DBs
NCBI-ProteinID:
CAI4033674
UniProt:
A0AA86N2U0
LinkDB
All DBs
Position
NsDNF:complement(4199361..4201472)
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AA seq
703 aa
AA seq
DB search
MIHTIEVEVAGKRLRLETGRMAKQADGAVVATYGDSVILATAVAAQTVKPGVNFLPLTVD
YQERAYAAGKIPGGYFKREGRPSEKEVLTSRLIDRPIRPLFPEGYYYETQVIASVLSADK
TGTTDIVSIIAASAALAVSSIPFEKPVGGVKIGRLNGQFIVNPDLETLDSGDLNLVVAGT
EDAVMMVEAGANELPESVMLDAIELAHAEIKKIVAAIHALRREAGKPKRAVEVETVDPAL
IEQVRALVIGPMREAILIPDKLARQERLDEICDEAAEQLKSEDDPKREHFVRLAFEQIEY
HEVRHSILERGVRADGRGTTDIRPITCEVGILPRTHGSALFTRGETQSLAVATLGTTEDE
QRIDALEGEYSRAFMLHYNFPPFSVGEAKPLRSPGRREVGHGALAERALKAVIPGKQVFP
YTLRLVSDVLESNGSSSMASVCGGTLALMDAGVPIKEPVAGIAMGLIKEGDRAVVLSDIL
GLEDHLGDMDFKVTGTKNGVTALQMDIKIGGITPELMRQALEQARVGRLHILDKMLSTLS
APRTNLSPFAPRIFTLKIKQDKIRDVIGPGGKTIRSIIAETGVKINVEDSGDVSIASADE
ASAQKAIEMINRLTAEVEVGKVYLGTVRKIMDFGAFVEVLPGTDGLVHISQLAHHRVKSV
SDEVKEGEQILVKVLEIDKQGKIRLSRKEAMAAPSGAPAGTSV
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgatccatacaattgaggtagaggtcgcgggaaagcgactccgtttggaaaccggccgc
atggccaaacaagcagacggggcggtcgtggcgacctacggggacagcgtcatccttgcc
acggccgtcgcggcgcagacggtcaagccgggggtgaactttctcccgctgaccgtcgat
taccaggaacgtgcctatgccgcggggaagatcccgggcggatatttcaaacgcgaaggc
cggccgtccgagaaggaagttctgaccagccgcctgatcgaccggcccatccggccgctg
ttcccggaaggctactattacgaaacgcaggtgatcgcgtcagtgttgtccgcggacaag
accgggacgacggacattgtctcgatcattgccgcgtccgccgcgctggcggtgtcgtcg
attccgttcgagaagcccgtgggcggcgtgaagatcgggcggctcaacgggcaattcatc
gtgaacccggatttggagacattggacagcggcgatttgaacctggtggtggcgggcacc
gaggacgcggtgatgatggtggaggccggcgccaatgaattgccggaatccgtcatgctc
gacgcgatcgaactcgcccatgccgagatcaagaagatcgtcgccgcgatccatgccttg
cggcgggaagcggggaagccgaagcgagccgtcgaagtggagaccgtcgatccggcgttg
atcgagcaggtgcgcgccctcgtgatcggaccgatgcgggaagccattctgattcccgac
aagttggctagacaagaacggctcgacgagatttgcgacgaggccgcggagcagttgaag
tcagaggacgatcccaagcgcgaacacttcgttcgcctggcgttcgagcagatcgaatac
catgaggtgcggcatagcatcctggagcggggagtgcgggccgacggaagggggaccacc
gacatccgtcccatcacctgcgaagtgggtatcctcccgcggacgcacgggtcggcgctc
tttacccggggcgaaacgcagagtcttgcggtggcgacgctgggcacgaccgaggatgag
cagcggatcgacgcgttggaaggcgagtacagccgagccttcatgttgcattacaatttt
cctccgttcagcgtcggagaggcgaagccgctgcggtcgccggggcggcgggaagtgggg
cacggggcgctggccgagcgcgcgctcaaggcggtgattcccggaaagcaggtctttccc
tatacgctccggctggtgtcggacgtgctggaatccaacggctcgtcgtccatggcctcc
gtgtgcggcggaaccttggcgctcatggacgccggcgtgccgatcaaggagccggtcgcg
ggcattgccatgggattaattaaggaaggagaccgggcggtggtgctgtccgacatcctg
ggccttgaagaccatttgggcgacatggatttcaaggtgaccggcaccaagaacggcgtg
accgcgcttcaaatggacatcaagatcgggggaatcacgcccgaactcatgcggcaggcg
ctggaacaggcgcgcgtgggacggctgcacatcctcgacaagatgttgagcaccttgagc
gcgcctcgaacgaatctctcgcccttcgcgccgcgcatcttcacgctgaagatcaagcag
gacaaaatccgggacgtgatcggtccgggcggcaagaccatccgctcgatcattgcggaa
accggcgtcaagatcaacgtcgaggattctggcgacgtgtccatcgcctcggccgacgag
gcgtcggcgcagaaggcgatcgagatgatcaatcggctgacggccgaggtcgaggtcggc
aaggtctacctcggcacggtgcgcaagatcatggacttcggcgcgttcgtcgaggtgctg
cccggcaccgacggcctcgtccatatctcccagctcgcccatcaccgggtgaaatcggtg
tcggacgaggtgaaggagggggagcagatcctggtgaaggtcctggagatcgataagcaa
gggaagatccggttaagtcgcaaggaagcgatggcggcgccgtccggggcgcctgccgga
acctcggtttga
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