KEGG   Neobacillus thermocopriae: BTDUT50_08425
Entry
BTDUT50_08425     CDS       T06692                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
ntm  Neobacillus thermocopriae
Pathway
ntm02024  Quorum sensing
ntm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ntm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BTDUT50_08425
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BTDUT50_08425
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ntm03019]
    BTDUT50_08425
   03036 Chromosome and associated proteins [BR:ntm03036]
    BTDUT50_08425
Messenger RNA biogenesis [BR:ntm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BTDUT50_08425
Chromosome and associated proteins [BR:ntm03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BTDUT50_08425
SSDB
Motif
Pfam: Hfq LSM Hfq_1 DUF5608
Other DBs
NCBI-ProteinID: QAV26658
LinkDB
Position
1602571..1602795
AA seq 74 aa
MKNTINIQDQFLNQLRKEETTVTVFLLNGFQLRGLVKGFDNFTVLLEVDGKQQLIYKHAI
STFAPQKNVKIEIE
NT seq 225 nt   +upstreamnt  +downstreamnt
atgaaaaacacgataaacattcaagatcagtttttaaaccaattgcggaaggaagaaaca
acggttactgtatttttgctaaatggatttcaattgcgtgggttagtgaaaggatttgac
aatttcacagtattgttagaagtggatggaaaacaacaattaatttataaacatgccatt
tccacatttgcaccacaaaaaaacgtaaaaattgagattgagtaa

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