Neokomagataea tanensis: D5366_00290
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Entry
D5366_00290 CDS
T06079
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ntn
Neokomagataea tanensis
Pathway
ntn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ntn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D5366_00290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ntn03400
]
D5366_00290 (mfd)
Enzymes [BR:
ntn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D5366_00290 (mfd)
DNA repair and recombination proteins [BR:
ntn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D5366_00290 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
UB2H
Cas3-like_C_2
AAA_16
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QDH23963
UniProt:
A0A4Y6V1T0
LinkDB
All DBs
Position
complement(59605..63096)
Genome browser
AA seq
1163 aa
AA seq
DB search
MEQNETKNRETAAAFGPVVWGVPEGSVAFLLRQRLAEHEGPLLHVARDDASVAALADMLA
WLMPEVEVLKLPAWDCLPYDRVSPNPAIVAERVGTMCRLLEPTKARRIVLTTIHALVQRL
PPKAAFAGQSINVAEGESLDQSLLIELLIASGYNRTDTVMEPGEFATRGGIFDLFPSGAA
EPVRLDLFGDEVENIRNFDVGTQRSTQTLKRFVLRPVSEFALTPDNISHFRTGWRDSFGS
SAAGDVVYAHVSEGRRHPGLEHYLPLFYDTHDQHMATVLDYVPGAAVSFEAQTPDVLRAR
LEMITDHYEARRVPVREGETPYRALPPHRLYLNQHAWDAMLAHAPAVMLNSFAKPDLGTG
IDAGGRPGALFARAKDGSRDGVFEAFGQQVKDWSEQGRRTYVTAWSRGSRDRIAHLLKEH
GVAVAEYEDWPSAASLPKGTVGLLVLGLERGFVLDRLCFVSEQDLLGERIARPPRRKKRG
EQFISQIGEIAEGDLVVHHDYGIGRYAGLETVTEGRVAHDYLSISYDGEQRLLLPVENID
LLSRFGSEQTGVQLDRLGGTSWQDRKAKMKSRIRVMAGELIRTAAARALREAPTLAPAEG
LWDEFCARFPYVETEDQSRAIADVLEDMSAGRPMDRLVCGDVGFGKTEVALRAAFVAALS
GMQVAVVVPTTLLARQHFRSFSARFEGLPVRVAQLSRLVTAKEATKVREELAGGQIDIVV
GTHALLAKTVSFDRLGLLIIDEEQHFGVSHKEKLKALREDVHVLTLSATPLPRTLQLSLS
GVREMSLIATPPTDRLAVRTFITPFDSVMIREAIQRERFRGGQVFCVLPRLADLDRMAER
LAEIVPDAKVVQAHGRLTPTELERVMTEFADGRYDILLSTNIVESGLDMPSVNTIIIHRA
DMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTNPLSAASQKRLEIMQTLDSLGAGFTLASH
DLDLRGAGNLLGDEQSGHIKEVGIELYQQMLEDAVLDMRRERGRRAEEEDADWTPNIILG
LPVLIPEAYVKDLPVRLGLYRRIAALQNEDEVEAIRAELIDRFGKMPAEVGNLLDVVLIK
RACREAGVERLETGPKGMVLQFRRNRFRNPTGLLDWVARKKDAGVKIRPDQKLAIIREMT
NAKRIGYAKQVTGVLCKLVRKAS
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaacgaaaccaagaatcgcgaaaccgccgccgcattcggcccggttgtgtgg
ggtgtgccggaagggagcgtggcgtttttgctgcgtcagcgtctggctgagcatgaaggg
ccgctgctgcatgtcgcgcgcgatgatgcgtccgtggcggctctggccgatatgctggcg
tggttgatgccagaggtggaggtattaaagctcccggcttgggactgcctgccttacgac
cgtgtttctcctaaccctgccattgtggcggagcgggtaggtacgatgtgccgcctgttg
gagcccacaaaagcacggcggattgtgctgacgacgatccatgctttggtgcagcgcctt
ccaccaaaggcggcttttgcggggcagtccatcaacgtagctgagggtgaaagcctcgac
cagagcctgctgatcgagcttttgatcgcaagcggttacaaccggacagatacggtaatg
gagccgggcgagtttgcgacgcgcggcggtatcttcgatttgttcccttccggtgcggca
gaacctgtacgcttggatttgtttggtgacgaagtcgaaaatattcgtaattttgacgtt
gggacccagcgttcaacacaaacattaaagcgttttgttctgcggcctgtgtctgaattt
gcgctgacgccggataatatcagccatttccgtacgggctggagagatagttttggtagt
tccgctgccggggacgtagtttacgctcacgtgtctgaagggcggcgtcatccgggttta
gagcactacttgccacttttttacgatacacatgaccagcacatggccacggttttagat
tatgtgccgggtgctgcggtcagttttgaagcacagacgccggatgtattacgggcgcgg
ttagaaatgatcacggatcattatgaagcccgccgtgtccctgtgagggagggagaaact
ccttatcgggcgttgccgccgcataggttgtatctgaaccagcatgcttgggatgcgatg
ctggctcatgccccggccgtgatgctgaacagttttgccaagcctgatcttggtacaggt
attgatgccggtgggcgtccgggggcgttgtttgcgcgggcgaaagacggctcgcgtgat
ggcgtctttgaagccttcggccagcaggttaaagattggtctgaacagggacggcgcact
tacgtcacagcttggagccgtgggtctcgggaccgtatcgcgcatttgttaaaagagcat
ggtgttgcggtagctgagtatgaagactggccttctgctgcgtccctgcctaaaggcacg
gttggccttttggttttagggttggagcgagggtttgttctggaccggctctgcttcgtt
tctgagcaggatttgctaggggagcgcattgcccggccaccgcgtcgcaaaaaacgcggg
gagcagtttatctctcaaattggagagatcgccgagggtgaccttgttgttcatcacgac
tacggtattgggcgttacgctgggctggaaacggtcacagaaggccgtgttgcacatgat
tacctttccatttcgtacgatggtgagcagcgccttttattacctgtagagaatatcgat
ttgctgagtcgttttggctctgagcaaacaggtgtgcagcttgaccgtttgggcggaacg
tcttggcaggaccgtaaggccaagatgaaatcccgtatccgcgttatggcgggtgaactg
attcgtaccgctgcggcgcgtgctttacgcgaggcgccgaccttagcgccggcagaaggg
ctctgggacgaattttgtgcgcgtttcccttatgtggagacggaagatcagtcgcgcgcc
attgccgatgtgcttgaagatatgagcgccgggcgcccgatggatcgcttggtgtgtggc
gatgttgggttcggcaaaaccgaagttgcgctacgtgcggcttttgtcgctgctctatct
ggcatgcaggttgcggttgttgtcccaacgacgctgctggccagacagcatttccgcagc
tttagcgctcgttttgaggggcttccagttcgggtggcgcaactctcgcgtttggttacg
gccaaggaagccactaaagtccgtgaagaattggcaggtggtcaaatagacattgttgtg
ggcacgcacgcgcttcttgcaaagacggtgtcttttgatcggctgggcttactcatcatc
gacgaagagcagcatttcggcgtatcccataaggaaaaactcaaagctctgcgggaggat
gtccacgttctgaccctttccgcaacgccactcccacggacattgcagctttctttgtcc
ggtgtgcgtgagatgagcttaattgcgacaccaccaacagaccgtttggcagtgcggacg
tttattaccccgtttgacagcgtgatgatccgtgaagcgattcaacgtgagcgtttccgt
ggcgggcaggtattttgtgttttgcctcgcttggcggatttggaccgcatggcggagcgt
ctggcagagattgtgccggatgcgaaggtcgttcaagcgcatggccgtctgacgccaact
gagcttgaacgggtcatgacggagtttgcggacggacgttatgatatcctgctgtcgacg
aatattgtcgaaagtgggctcgatatgcccagcgtgaatacaattattatccatcgcgcc
gatatgttcggtcttggccagttatatcagctccgtgggcgtgtcggccgtggaaagcag
cgtgggtacgcgtacctgacttggccgcagacaaatccgctttcggcagcctctcaaaag
cgtttggagattatgcaaacgcttgattctctgggggctggttttactttggcctcacac
gatctagatctgcgtggtgcagggaatctgctgggtgatgagcagtcgggtcacattaaa
gaagtcggtatcgagctgtaccagcagatgctggaagacgcagtgttggatatgcgccgt
gagcgtgggcgccgggccgaagaggaagacgcggactggacgccaaatattatactcggc
ctcccggtccttattcccgaagcatatgtaaaagatttgcctgttcggttaggactgtat
cggcgtatcgctgcgctacagaacgaagatgaggtggaagctattcgtgctgagttgatc
gaccgtttcggtaaaatgccagctgaagtcggtaatttgcttgatgtggttctgatcaag
cgcgcctgccgtgaggctggtgtcgagcgtttggaaacaggcccaaaaggtatggtcctg
caattccgccgcaaccgtttccgtaatccgacgggccttttagactgggtggcacggaaa
aaagatgcgggcgttaaaatacgccctgatcagaaattggccattatccgtgaaatgacg
aatgccaagcgtatcggctatgcaaagcaggttacgggtgttttgtgcaagctcgtccgc
aaggcatcttag
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