Neokomagataea tanensis: D5366_01190
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Entry
D5366_01190 CDS
T06079
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ntn
Neokomagataea tanensis
Pathway
ntn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ntn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
D5366_01190 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ntn03021
]
D5366_01190 (rpoD)
Transcription machinery [BR:
ntn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D5366_01190 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Snapin_Pallidin
Motif
Other DBs
NCBI-ProteinID:
QDH24103
UniProt:
A0A4Y6V287
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All DBs
Position
complement(239742..241688)
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AA seq
648 aa
AA seq
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MATKTASNTERNAQEQEGDATLLDTQSAAVKRLIAKGRERGHITFDELNAVLPQDQMSSE
QIEDVMAALSEMGIQVLDAEEQEENDTSRVDAAETEEESDEPQGGNVDAEAASRTDDPVR
MYLREMGTVELLSREGEIAIAKRIEAGRDEMIGGLCESPLTIRAIISWHDRLKDGEMLLR
DIVDLEASQAGGPGPEGEEGEEGEEPAEDEAPEDENEDGEPQEGSGLSLSALEEKLRPEI
LARFEAIEPLYKKLREVQVRRLEALEGGAEHSSDAEQSYEALRGELVSIVEQVHLHNNRI
EELVAQIKIHVQRLNSIEGRMLRLAESCKISRDDFLLKYRNREMDPTWIEFISKLPGKGW
KTLTTKHVESLEHLRNELATLSHETGLPVGEFRRVYTTISRGERDSTRAKKEMIEANLRL
VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
AKTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKEPIS
LETPIGDEEDSHLGDFIEDKTAVIPLDAAIQTNLREATTRVLASLTPREERVLRMRFGIG
MNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLDDN
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaaaacagcctcgaatacggaacggaacgcacaggagcaggaaggcgatgct
acgcttctggatacgcaatccgcggccgttaagcggctgatcgccaaagggcgtgaacgc
gggcatatcacttttgacgagctgaacgcggttctgccgcaggaccagatgtcttcagaa
cagattgaagacgtcatggctgcgctgtcggaaatgggcatccaagtgctcgacgcggaa
gagcaggaagagaacgatacttcgcgcgttgatgctgctgagacagaagaggaatctgac
gagccacaaggtggtaacgtcgacgccgaagcggcgagccgtacagatgaccctgtgcgt
atgtacctacgcgaaatgggtacggttgaactgctctcgcgcgaaggcgaaatcgccatc
gctaagcgcatcgaggctggtcgggatgagatgatcggtgggctgtgcgaaagcccgctg
actatccgcgcaattatttcgtggcatgaccgtttgaaagacggtgaaatgttgctgcgt
gacatcgtggaccttgaagccagccaagcaggtggcccgggccccgagggtgaagaaggt
gaggaaggcgaagagcctgccgaagatgaagcgccagaagacgaaaacgaagacggcgag
cctcaagagggcagcggtctctctttgtccgctttggaagaaaagcttcgcccagaaatt
ctcgcacgttttgaggctatcgagccgctctacaagaagctgcgtgaagtccaagtgcgc
cgtctggaagcattggaaggtggcgccgagcattcttcagacgcagagcaaagctacgaa
gctctgcggggtgaattggtaagcattgttgagcaggttcacctgcataataatcgtatc
gaagagctggtagcccaaattaaaatccacgtgcagcgcttgaacagcattgaagggcgc
atgttgcgtctggctgaaagctgcaaaatttcgcgcgatgatttcttgctgaagtatcgt
aaccgcgagatggatccgacgtggatcgagtttatcagcaagctgcctggcaaaggctgg
aaaactctgaccacaaagcacgtggaatcgcttgaacatctgcgaaacgaactggcgaca
ctttcgcacgaaacgggtttgcctgttggtgagttccgccgtgtttacacgactatttcc
cgcggcgaacgtgactcaacgcgcgctaagaaagaaatgattgaggctaacctgcgcctc
gttatttctattgccaaaaagtacacgaaccgtgggttgcagttcctggatcttattcag
gaaggtaatatcggcctgatgaaggccgtggataagttcgaataccgtcgcggttataag
ttctctacttatgcaacgtggtggatccgtcaggctattacgcgttcgattgcggatcag
gcaaagacgatccgtattccggtgcatatgatcgagacgatcaacaagctggtgcgtaca
tcacgccagatgttgcatgaaatcggccgcgaacctgctccagaagaactggctgaaaag
ctgggtatgcctctggagaaggtgcgtaaggtcctcaagattgcaaaagagcctatctcg
ctcgaaacgcctattggtgacgaggaagatagccatcttggcgatttcatcgaggataaa
acagccgttatccctctagacgctgctattcagaccaacctgcgcgaagcaacaacgcgc
gttctggcatccttgacgccgcgtgaagagcgcgtgctgcgtatgcggttcggtattggt
atgaacaccgaccatacgctggaagaagtcgggcagcaatttaacgtaacgcgagagcgt
attcgtcagattgaggcaaaggcgcttcgtaagttgaagcacccaagccgtagccgtaag
ctgcgctccttccttgacgacaattga
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