Neokomagataea tanensis: D5366_01840
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Entry
D5366_01840 CDS
T06079
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ntn
Neokomagataea tanensis
Pathway
ntn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ntn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D5366_01840 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ntn03021
]
D5366_01840 (rpoC)
03400 DNA repair and recombination proteins [BR:
ntn03400
]
D5366_01840 (rpoC)
Enzymes [BR:
ntn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D5366_01840 (rpoC)
Transcription machinery [BR:
ntn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D5366_01840 (rpoC)
DNA repair and recombination proteins [BR:
ntn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D5366_01840 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Biotin_lipoyl_2
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QDH24212
UniProt:
A0A4Y6V2E6
LinkDB
All DBs
Position
complement(366330..370646)
Genome browser
AA seq
1438 aa
AA seq
DB search
MNELMKILGQTGQSLTFDHIKIQLASSEQIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIVCEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIATMLDLPLKDVEPVLYFERFLVLDKGVCDSDQIESYKHGKKRDQYLLDEIRCEDLL
DEYPDAGIEVGIGAEAIKKALSSYDWGIPNDEERALSLAAQEQGRPDPFDYDAEVMEGDS
EKTMMRKKLRKATSEAARKKLVKRLKLVESFVESGSRPDWMIMDIVPVIPPELRPLVPLD
GGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRMLQEAVDALFDNGRRGRAI
TGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALEL
FKPFIYSKLEKYGHATTIKAAKRMVEKERPEVWDILEEVIREHPVMLNRAPTLHRLGIQA
FEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILSPANG
KPIIVPSQDIVLGLYYLSLEVPEYRETPDEAVIEGDKIVKAGPPAYSDVSEIESAMLAGS
LKLHDKIRLRLNTIDADGNKIRETILTTPGRALIAQILPRHPLVPFDLINKQLTKKNVSD
VIDTVYRHCGQKEAVIFCDRLMALGFRHAARAGISFGKDDMIIPAEKATLVAHTADEVKE
FEQQYQDGLITAGERYNKVVDAWSRCTDEVQAAMLKEISKQVIGKPTNSVWMMSHSGARG
SPAQMKQLAGMRGLMVKPSGEIIEQPIIANFKEGLSVLDYFTSSHGARKGLADTALKTAN
SGYLTRRLVDVAQDCIIVENDCGTERGLTVRAVMDSGEVVASLSERILGRTISKDVLHPV
TQEVVAPRNALVDEAMAESIEKAGVESIEIRSVLTCDSRVGICGHCYGRDLARGTPVNIG
EAVGVIAAQSIGEPGTQLTMRTFHIGGAATRGAEQSMVEASRDGVITIKNRNVVENSQKV
PVVMSRNCELLLKDENGVERARYRVPYGARLMVGEGDTVARGQKMAEWDPYTLPIITERA
GTVEYLDLIDSITLVERMDEVTGLSSKVVVDYKQAAKGVDLRPRLQLKDEAGNVVKLVNG
NDARYFLSPDSILSVESGAVVHAGDVLARIPREGSKTRDITGGLPRVAELFEARKPKDHA
IIAEGDGRIEFGKDYKSKRCIIVKNDETDEETQYLIPKGKHVSVQEGDFVQKGDPLVDGP
RVPHDILKVMGIEALSDYLVNEIQDVYRLQGVKINDKHIEVIVRQMLQKVEILEPGDSTY
LIGETVDRIEYEIENQRLTEQGDTPARAMPVLQGITKASLQTQSFISAASFQETTRVLTD
AATSGKVDTLNGLKENVIVGRLIPAGTGSVMNRLRGIAASEDRRRVAKPTAAVEDAAE
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactcatgaagattcttggtcagaccgggcagtctttgacctttgatcatatt
aagatccagctcgcatctagcgagcagatccgctcttggtcgtatggtgagatcaagaag
ccagagacgattaactaccgtacgttcaagcctgagcgtgacggtttgttctgtgcgcgc
atttttggtccgatcaaggactatgaatgcttgtgcggtaagtacaagcggatgaagttc
cgcggtatcgtctgcgaaaaatgcggtgtagaagtcacgctagctaaggtgcgccgtgag
cgcatgggccatattgagcttgcgtctcctgttgcgcacatctggttcttgaagtctctg
ccaagccgcatcgctacgatgctggatctgccattgaaagatgttgagccagtcctgtat
ttcgagcgcttcctcgtgcttgataaaggcgtctgtgactcagaccagatcgaatcctat
aagcacggcaaaaagcgtgaccagtacctgctggacgagattcgctgtgaggacctgctc
gacgaatatccagacgcgggtattgaagtgggcatcggtgcggaagccatcaagaaggca
ctctccagctatgactggggtatcccaaatgatgaagaacgcgcactgagcttagcagct
caagagcagggccgcccggacccgtttgactatgacgcggaagtcatggaaggcgattcc
gaaaaaacgatgatgcgtaagaagctgcggaaagcaacttctgaggctgctcgtaagaag
ctggtcaagcgtctaaagctcgttgagtccttcgttgagagcggttcgcgccctgattgg
atgatcatggacatcgttccggtcatcccgccggaactgcgtccgctggtgccattggat
ggtggccgtttcgcgacgtccgacctgaacgatctgtaccgccgcgtcatcaaccgtaac
aaccgtttgaagcgtctgattgagcttcgtgcgccggacatcattgttcgtaacgaaaag
cgcatgttgcaggaagctgttgacgcactgttcgataacggtcgtcgtggccgtgcgatc
acaggtgcaaataagcgtcctctgaagtccctttcagatatgctgaagggtaagcagggt
cgcttccgtcaaaaccttcttggtaagcgcgtcgactattcaggtcgttcggtcatcgtg
gttggaccagagctgaagctgcaccaatgtggtcttccgaagaagatggctttggagctg
ttcaagcctttcatctattcgaagcttgaaaaatatggtcatgctacgaccattaaagct
gcgaagcggatggtggaaaaagagcgcccggaagtttgggatatccttgaagaggttatc
cgtgagcacccggttatgctcaaccgtgcgccaacacttcaccgtttgggcattcaggcg
ttcgaaccaacactgatcgaaggtaaagcaattcagcttcacccgttggtctgtacagcg
ttcaacgctgactttgacggtgaccagatggccgtgcacgtgccattgtcgctcgaagct
cagctcgaagcgcgcgtgttgatgatgtccacgaacaacatccttagcccagcaaacggc
aagccgattatcgtgccgtctcaggatattgttctgggtctgtattatctgagcctcgaa
gtccctgaataccgtgaaacaccggacgaagcggtcatcgaaggcgacaagatcgttaag
gcaggtcctccggcttattcggacgtctcggaaatcgagagtgcgatgctggctggctct
ttgaagctgcacgacaagattcgtctgcgcctcaacacgatcgatgctgatggtaataag
atccgcgaaacgatcctgacgacgccaggccgtgcattaattgcacagatcctgccgcgc
catcctctcgtgcctttcgatctgatcaacaagcagttgacgaaaaagaacgtgtctgac
gtgatcgacactgtttaccgtcactgtggtcagaaggaagcagtgattttctgcgaccgt
ttgatggctcttggtttccgtcatgctgcgcgcgctggtatctccttcggtaaggatgac
atgatcatcccagctgagaaggcgacgcttgttgctcacacggctgatgaagtgaaagag
ttcgagcagcagtatcaggatggtctgatcacggctggcgagcgttacaacaaggtggtc
gatgcttggtcgcgttgcacagacgaagtgcaggcagcgatgttgaaagaaatttccaag
caggtcattggtaagcctacgaactctgtgtggatgatgagccattctggagcccgtggg
tcgccggctcagatgaaacagcttgctggtatgcgtggtctgatggtgaagccatcgggt
gaaattatcgagcagccgatcattgccaactttaaagaaggcctttcggttctcgattac
tttacctcaagccatggtgcccgtaaggggcttgctgatacggctttgaagacagctaac
tctggttatctgacacgccgtcttgttgacgttgctcaggactgcatcatcgtagagaat
gattgcggcaccgagcgcggcctgacagttcgtgcggtgatggacagcggtgaagtcgtt
gcgtctctctcagagcgtatcctcggccgtacaatctccaaggatgtcctgcacccggtc
acacaagaagtagttgctccccgcaatgctcttgtcgacgaagccatggctgaatccatt
gagaaggccggtgtagaaagcatcgaaattcgctctgttctgacatgcgacagccgcgtt
ggcatctgtggccactgctacggccgtgacttggcccgcggtacgccggttaacattggt
gaggctgtcggtgttattgcggcgcagtccatcggtgagcctggcacacagctgaccatg
cgtaccttccatattggtggtgcggcgacgcgtggcgctgagcagtcaatggttgaagca
tcgcgcgacggtgtaatcacaatcaagaaccgtaacgtcgttgagaattcacaaaaagtt
ccggtcgtcatgtccagaaactgtgaacttctcttgaaagacgagaacggtgttgagcgt
gcccgttaccgtgtgccttacggtgcgcgtttgatggttggggaaggtgatacggttgct
cgtggccagaagatggctgagtgggatccgtacacacttccaatcatcaccgaacgtgcc
ggtacagttgagtatctagacctgatcgattccattacgctcgttgagcggatggacgaa
gtcaccggtcttagctcaaaggtcgttgttgactacaagcaggcagccaagggtgtggat
ctgcgtccgcgcttgcagctgaaggatgaagccgggaatgtcgtcaagctggttaacggc
aatgacgctcgctacttcctatcgccagattcgattctgtcggttgaaagcggtgcagtc
gttcatgccggtgacgtgctggcccgtattccacgtgaaggttcgaaaacgcgtgacatt
accggtggtctgccgcgcgttgctgagctcttcgaagcccggaagccaaaagaccatgcg
atcattgccgaaggtgatggacgcatcgaatttggcaaggactataagtctaagcgctgc
atcatcgtcaaaaacgatgaaacagatgaagagacacagtacctgattccgaagggcaag
cacgtttctgttcaggaaggtgactttgtccagaagggtgaccctctggtcgatggacct
cgtgttccacacgacattctgaaggtcatgggtatcgaggctctgtctgattacttggta
aatgaaattcaggacgtttaccgactgcagggcgtgaagatcaacgataagcacattgag
gtgattgttcgccagatgctgcagaaggttgaaattcttgagccaggtgattccacctac
cttatcggtgagacggttgatcgtattgaatacgagattgaaaaccagcgtctgaccgag
caaggggatacaccagcacgcgccatgccggtcctgcagggtattacgaaggcgtctctg
cagacgcagtcctttatctctgcagcatccttccaggagacgacacgcgtccttacagac
gctgcgacctctggtaaggtggatacattgaacggcttgaaagaaaacgtcatcgttggc
cgtctgatacctgcaggtacgggtagcgttatgaaccgtctccgtggtattgcagcgagc
gaagaccgccgccgagtcgctaaaccgacggcagctgttgaagatgcggcagagtaa
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integrated database retrieval system
