Nicotiana tomentosiformis: 104084910
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Entry
104084910 CDS
T05025
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03013
Nucleocytoplasmic transport
nto03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104084910
03015 mRNA surveillance pathway
104084910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104084910
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104084910
mRNA cycle factors
P-body specific factors
104084910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
104084910
NCBI-ProteinID:
XP_009587163
LinkDB
All DBs
Position
7:complement(59432716..59448511)
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AA seq
469 aa
AA seq
DB search
MKNRRTKVVVRHLPPTLSQSTLLEQVDSRFAGRYNWFTFRPGKTSLKHQSYSRVYIDFRN
TEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPKHWSKKDAREATILKDPEYLEFL
EFLAKPVENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYIRQKRAAKSGARRSLSNGRS
TKRVGGTSSRTPSSAASKRGSEKRTSTTMYVLRDSSKAGNGKDKSYILVPKRDDQQLSDK
SGTSAPGSGIDLVEGEIGRSVTADSGKKKILLLKGKEKEGPNVSGGSLAQQNVASTLKNS
PSSSAPKQNQRQEASGKIIRSILLKDARQNQSASQSELQIQDKDKRPPRPPSMQLFQKDT
SGANEDKVAGNDLHVVHIEKQERRSRNRDRPDRGVWAPLRRADSSQASNEQSSQVRDFVE
GNYKHGSRRGLRDADGPSVGEGKPVRRGGTSAYNSLEKQVWVQKSSSGS
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatcggcgaaccaaagtcgttgtgcggcacttgccgccgacgctttctcagtcc
acgcttctcgagcaggttgattctcgcttcgctggtcggtacaactggttcacttttcgc
cctggcaagacgagcctgaagcatcaaagctattcaagagtctatattgactttagaaat
acagaagatgttattgagttcgctgagttctttgatggacacgtgtttgtgaatgagaaa
ggcactcagttcaaaacaattgtcgagtatgctccttcacagcgtgttccaaagcactgg
tccaagaaggatgcccgtgaagcgaccatactgaaagatcctgaatatctggagttcctt
gaatttcttgcaaagcctgttgagaatcttccaagtgctgagatacaattggagagaaaa
gaggctgaacgagctggctcagcaaaggatgctcctatagttactccattaatggattat
atacgtcagaaaagagctgcgaagagtggagctcggagatctttatctaatggaagatca
accaaaagggttggtggcacatcctcaagaacccctagctcagctgcatctaaacgaggc
tctgaaaagaggacttctacgaccatgtatgttctacgggacagttctaaggctggaaat
ggtaaggacaaatcatacattctagtgccaaaacgtgatgatcagcagctctctgacaag
tctggaacctctgctcctggatctgggattgatttagtggaaggggaaattggtcgttct
gtaactgctgatagtgggaagaagaaaatcctgctcttgaaggggaaggaaaaagaaggt
cctaatgtttctggtggttcattagctcaacagaatgtggcatctactctcaagaattca
cctagttcatctgctccaaaacagaaccagcgccaagaggcaagtggcaagatcatcaga
agtattcttctcaaggatgctcggcagaatcaatcagcatctcagtcagagcttcaaata
caggataaggacaagagacctcctcggccaccaagtatgcagttgtttcagaaggatact
agtggagctaatgaggataaggtcgctggaaatgacttgcatgttgtccacattgagaag
caagaaagacgttctaggaatagagataggcctgatcgtggtgtttgggctcctcttcgc
cgtgctgatagttcacaggccagtaatgaacaatcttcccaagtgcgagattttgttgaa
ggtaactataaacatggtagtcgtcgtggtttgagggatgcagatggaccttctgttggg
gaaggaaaacccgtgagaaggggaggtacttctgcctacaattctcttgagaaacaagtg
tgggttcaaaagtcaagttctggttcttag
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integrated database retrieval system
