Nicotiana tomentosiformis: 104084911
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Entry
104084911 CDS
T05025
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03420
Nucleotide excision repair
nto04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104084911
09124 Replication and repair
03420 Nucleotide excision repair
104084911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nto04121
]
104084911
03400 DNA repair and recombination proteins [BR:
nto03400
]
104084911
Ubiquitin system [BR:
nto04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
104084911
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
104084911
TCR (transcription coupled repair) factors
Cul4-CSA complex
104084911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
104084911
NCBI-ProteinID:
XP_070052386
LinkDB
All DBs
Position
2:161721207..161748686
Genome browser
AA seq
1095 aa
AA seq
DB search
MSIWNYVVTAHKPTNATHSCVGNFTAPHELNLIIAKCTRIEIHLLTPQGLQCICLQPMLD
VPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDAEASEVITRAMGDVSDRIGRPT
DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKP
TIVVLYQDNKDARHVKTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPPPLCGVLIIGEE
TIVYCSASAFKAIPIRPSITRAYGRVDSDGSRYLLGDHNGLLHLLVITHEKEKVTGLKIE
LLGETSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDPKGSYVEVLERYVNLGPIVDFC
VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDT
FLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLVSSI
SRDLKNEWFAPAGYSVNVATANATQVLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCL
DINPIGENPNNSQIAAVGMWTDISVRIYSLPDLNLITKEQLGGEIIPRSVLMCSFEGISY
LLCALGDGHLLNYVLSMSTGELTDRKKVSLGTQPITLRTFSSKDATHVFAASDRPTVIYS
SNKKLLYSNVNLKEVSHMCPFNVAAFPDSLAIAKEGELTIGTIDEIQKLHIRSIPLGEHA
RRISHQEQTRTFALCSVKYTQSNADDPEVHFVRLLDDQTFEFISTYPLDQFEYGCSILSC
SFSDDSNVYYCVGTAYVMPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK
LLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLI
FKHEEGAIEERARDYNANWMSAVEILDDDIYLGSENNFNLFTVRKNSEGATDEERSRLEV
VGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQ
TNLRKVIKGVGGLSHEQWRSFYNEKKTVEAKNFLDGDLIESFLDLSRIRMEDISKAMAVP
VEELMKRVEELTRLH
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgagtatatggaactatgtggttacggctcacaagccaacgaacgctacacattcctgt
gttggcaatttcaccgctcctcacgagctcaatcttatcattgcgaaatgtactcgaatc
gagattcatttactcactccccaaggtttacagtgtatttgtctgcagcctatgttagat
gtgccaatatatgggagaatcgcgacactcgagcttttccgtccccacggtgaaacacaa
gatcttctcttcattgcgacggagcgatataaattctgtgtccttcaatgggatgctgag
gcatctgaagttatcacaagagcaatgggagatgtctcagatcgaataggccgtcccaca
gataacggtcagattggtataatcgacccagactgcagattgatcgggttgcatctttat
gatggactatttaaggttattccatttgataacaaaggccaactgaaggaagcctttaac
atcaggcttgaggagcttcaagttttggatattaaattcttgtatggttgcccaaagcct
acaattgttgttctatatcaggataacaaggacgcacgacatgtcaaaacatatgaggtg
tcgttgaaggataaagattttattgaagggccatgggctcaaaataatctcgataatgga
gcttctttgctaataccagtacctccgccactgtgtggtgtactgattattggagaagaa
accatagtttactgtagcgcttcagcttttaaggctatcccaattagaccttctatcaca
agagcatatgggcgggttgattctgatggttctcgatatttgcttggggatcataatggg
cttcttcacctacttgtaatcactcatgaaaaggaaaaagttaccggactcaaaattgag
ctactgggagaaacttctattgcatcaaccatatcatacctagacaatgcttttgtcttc
attgggtcaagctatggagattcacagctcgtaaagctcaatctccagcccgaccccaaa
ggttcttatgtggaagttctagagagatatgtcaatttggggccaattgtggacttctgt
gttgttgacctggagaggcaaggtcaaggtcaggtcgtgacttgctctggagcctataag
gatggctcacttcgtattgttcgaaatggaattggaataaatgaacaggcatctgtggaa
ctacaagggatcaaaggaatgtggtctcttagatcagctactgatgatccgtatgacaca
ttcttggttgttagcttcattagcgagacacgtgttttagctatgaaccttgaggatgag
ctggaagaaactgagatagaaggcttcaattctcaagtccagaccttgttttgtcacgat
gctgtatacaaccagcttgtacaggttacttctaactctgtaagattggtcagctctatc
tctagagatctgaaaaacgaatggtttgctccagccggctactcagtcaatgttgcaact
gctaatgccactcaggtactgttggcaactgggggtggccatctggtctacctagaaatt
ggtgatggggtgctgaatgaagtaaaatatgccaagttggattatgatatctcatgcctg
gacataaatccaattggtgagaatccaaacaatagtcaaattgcagcagttggaatgtgg
acagacataagtgtcaggatatattcacttcccgacttgaatctcattacaaaggaacag
ctaggaggggagataattcctcgttctgttcttatgtgttccttcgaagggatatcttat
ctactatgtgctttgggagatggtcatctcttgaattatgtattgagcatgagtactggt
gagctgacagacaggaaaaaagtgtctcttggaacccagcccataacacttcgtacattc
tcatctaaagatgctacacacgtctttgctgcctctgataggcccacagttatttacagc
agtaacaagaagctgctttatagcaatgtaaatcttaaagaagttagtcatatgtgccca
ttcaatgttgcagcttttccagacagcctcgcaattgcaaaagaaggagagttaacaatt
ggcactattgatgaaattcaaaagcttcacatccgttcaatacccctcggggagcatgca
cggcggatcagccatcaagagcagaccaggacatttgctctatgcagcgtcaagtatact
cagtcgaatgcagatgatcctgaagtgcattttgtccgcctgttagatgatcagacattt
gagttcatatcaacttacccccttgaccaatttgaatatggttgttccatacttagctgc
tccttttctgatgacagtaatgtgtattattgcgttgggactgcttatgtgatgccagag
gaaaatgaacctaccaagggccgaattttagtttttattgttgaagatggaaagctccaa
ctaattgcagagaaggaaactaagggagctgtctactctctaaatgccttcaatgggaaa
ctgcttgctgcaatcaatcagaagattcaattgtacaagtgggcctcgcgtgaagatggt
ggcagccgagaattgcagacagaatgtggacaccatggtcatatattggctctttatgtt
caaacacgtggggattttattgtcgtcggtgatttgatgaagtccatttctctactgatt
ttcaagcacgaggagggtgctatagaggagcgagcccgggactataatgcaaattggatg
tcagctgtcgagattctcgacgatgacatttatcttggttcggagaacaactttaacctt
ttcactgtcaggaaaaatagtgagggtgctacagatgaagagcgcagccgtcttgaagtg
gttggtgaataccaccttggtgaatttgttaataggttcagacacggttcacttgtcatg
cgattgccagattcagatgttggccagatacctaccgtcatatttggcacagtgaatggt
gttattggggtcattgcctcgcttcctcatgatcagtatttatttttggaaaagctgcag
acaaacttaaggaaagtgataaagggtgtaggcggactgagccatgagcagtggaggtcg
ttttacaatgagaagaaaactgtagaagctaaaaactttcttgacggagatttgattgaa
tcattcctagatcttagcaggatccggatggaagatatttctaaagcaatggcagttcct
gttgaggaactaatgaagagagtggaagagttgacaaggttgcattag
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