Nicotiana tomentosiformis: 104084984
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Entry
104084984 CDS
T05025
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104084984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104084984
Spliceosome [BR:
nto03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104084984
Complex C
U5 SnRNP specific factors
104084984
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
104084984
NCBI-ProteinID:
XP_009587244
LinkDB
All DBs
Position
11:26726384..26738758
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AA seq
2395 aa
AA seq
DB search
MWSGNGQDMWNNSNMAPPGTSGSAGGPPPPSMMQPLPPGGGPPPPSMMPPPPGTSSGPVM
MPPGTSGSSGGPAPPLPPPSYTVLPTEAQLEEKARKWMQLNSKRYSDKRKFGFVETQKED
MPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKILY
HITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NLLDVDPLEPIQLEMDEEEDSAVYNWFYDHKPLVKTKLINGPSYRRWHLSLPIMATLHRL
AGQLLSDLTDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINK
LIIRSPLRTEYRIAFPHLYNNRPRKVKLCIYHTPMIMYIKTEDPDLPAFYYDPLIHPIVT
KDRREKKVPEDDDDDDFTLPEGVEPLLNETPIYTDTTAAGISLLFAPRPFNMRSGRTRRA
EDIPLVSDWFKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKF
FQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFG
NAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQ
IRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFE
GRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWK
ANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTR
LWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLIL
ALERLKESYSVAVRLNQQQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDL
YSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINN
LQGVWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKD
MSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNEFITFSDTRVET
RHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMR
LMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIR
MTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIV
NKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPK
EIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYT
RAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIY
DDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKSVVTEPHHIWPSLTDDQWMKVE
VALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLT
AVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKET
GYTYIMPKNILKKFICIADLRTQIAGYLYGVSPPDNPQVKEIRCIAMPPQWGTHQQVHLP
SGLPEHDFLNDLEPLGWMHTQPNELPQLSPQDVTSHARILENNKHWDGEKCIILTCSFTP
GSCSLTAYKLTPTGYEWGRANKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMIPDNGPWN
YNFMGVKHTVSMKYGVKLGTPREYYNEDHRPTHFLEFSNMEEGDTAEADREDTFT
NT seq
7188 nt
NT seq
+upstream
nt +downstream
nt
atgtggagtggaaacggacaagatatgtggaacaatagtaacatggcaccaccaggtact
agcggtagtgctggaggaccgccgcctccgtcaatgatgcaaccgcttccgcctggtgga
ggaccgcctcctccgtctatgatgccgccgcctccaggtacaagctcaggaccagtaatg
atgcctcctggtacaagcggtagtagtggaggaccggctccgcctctgccaccgccttct
tatactgttttgccaactgaggctcagcttgaagagaaagctaggaaatggatgcagctt
aactctaagcggtatagtgataagcgcaaatttggatttgtggagacgcaaaaggaggat
atgcctccggagcatgttcgcaagattattagggaccatggggatatgtcatcaaaaaaa
tatcgtcatgataaacgtgtgtatctcggagctcttaaatttgtccctcatgctgtttac
aaactccttgagaacatgcctatgccgtgggagcaggttcgagatgtgaaaatactgtac
cacattactggtgctattacatttgttaacgagataccatgggttgttgaacctatatat
ctggctcagtggggcactatgtggatcatgatgagaagggagaagagagaccggcggcat
ttcaagagaatgcgttttcctccttttgacgatgaggagcctccattagattatgctgat
aatcttttggatgttgatcctttggagccaatccagttggagatggatgaagaagaagat
tcagctgtttataactggttttatgaccataagccattggtgaaaacaaagcttattaac
ggtcctagttaccgcaggtggcatttgtccctccctataatggctacacttcaccggctg
gctggacagctgctttcagatctgactgatcgcaattacttctacttgtttgatatggag
tcctttttcactgctaaagcattgaatatgtgcatacctggtgggcccaagttcgaacct
ttatatcgtgacatggagaaaggagatgaagactggaatgagtttaatgatatcaacaaa
ttgatcatcaggtcaccgctgaggacagaatacagaattgccttccctcacctctataac
aacagaccaagaaaggtgaagctttgtatatatcacactccgatgatcatgtacataaaa
acagaggatccagatctacctgctttctattatgatccgcttatacatcccatagtcacc
aaggaccgccgagagaagaaagttcctgaggatgacgatgatgatgactttaccttgcct
gagggtgttgagccattgctgaacgagactccaatctatactgatactactgctgctggt
atttccctgttgtttgccccacgcccatttaacatgagatctggtcggacaaggcgtgct
gaagatataccccttgtgtcagattggtttaaggagcattgtcctccatcatatcctgtc
aaggtgcgtgtcagttatcagaagctactgaaatgttttgtgttgaatgagctgcatcat
agacctcccaaggcccagaagaagaagcatcttttccgctcacttcaggccacaaaattt
ttccaaaccacagaacttgattgggctgaagctggtctccaagtttgcaagcagggatac
aatatgctgaatctcttgatccataggaaaaacctgaattatcttcaccttgattacaat
tttaatttgaagcctgttaagacattaactacaaaggaacgtaagaaatcccggtttggt
aatgctttccacctttgtcgtgaaattctgcgtttgacaaagctagttgttgatgccaat
gttcagttccgtctgggaaatgttgatgcatttcagctggcagatggattgcaatacatt
ttttcacatgttggtcaattgacgggtatgtaccgttacaagtataggcttatgaggcag
attcgaatgtgtaaggatttgaaacatttgatctattatcgattcaatactgggccagtt
ggaaaaggtcctggttgtggtttctgggcacctatgtggagggtgtggttattcttcctt
cggggtatagtgcctcttctggaacgatggttgggaaacttactggcgaggcaatttgag
ggtcgtcattcgaagggggtggccaaaactgtcacaaagcaacgtgttgaaagccacttt
gacttggagctccgtgctgcagtaatgcatgatgtccttgatgctatgccagagggtatc
aagcaaaataaagcgagaaccattttgcagcatctaagtgaagcatggcgttgttggaag
gcaaatattccttggaaggtcccaggtttgcctgttcctattgagaacatgattcttcgt
tatgtcaaatcaaaagctgattggtggacaaatgttgctcactacaaccgtgaacgtata
agaagaggagcaactgttgacaagactgtgtgtcgtaaaaaccttggaagattgacccgc
ctttggctgaaggctgaacaggagcggcaacataactacttgaaagacggcccatatgtt
actccagaagaagcagtagctatttatactaccactgtgcattggttggagtcgaggaag
ttttctcctattccattccctccattgtcatacaagcatgacacgaagctacttatcctt
gcccttgagagactgaaagaatcttacagtgtggctgtgaggttaaaccaacagcaaagg
gaagagttgggcctcattgagcaagcttatgataatccgcatgaggcattgtcaaggatt
aagcgtcacctgcttactcagcgtgccttcaaagaagttggcatagagttcatggacttg
tacagttacctgattcctgtttatgagatcgaaccacttgagaagattactgatgcgtac
ctggatcagtacctatggtatgaaggtgataagcgccatcttttcccaaattggattaag
cctgccgattcagagccaccaccactattagtgtataaatggtgtcaaggcataaacaat
ttgcaaggagtatgggacaccagtgaaggacagtgtgtggtgatgctgcagacgaagttt
gagaaattctttgaaaagattgacctgaccatgttgaacaggcttctgcgtttggtgctg
gaccacaatattgctgattatgttactgcaaaaaacaacgttgtgctgtcttacaaagat
atgagtcacacaaattcatatgggctaatacgtggtcttcaatttgcttcatttgttgta
cagtactatgggcttgtgttggatctcttgctcctaggtttaactcgagctagtgaaatt
gctggtccaccacagatgcccaatgaattcataacctttagtgatactagagtggaaacg
aggcatcctatccggttgtactctcgctacattgacaaggtgcatatattatttcgcttc
actcatgaagaggctcgggaccttatccaaagatatcttactgagcatcctgatcccaac
aatgaaaacatggttggttataacaacaagaaatgctggccaagggacgcaagaatgagg
ctcatgaagcatgatgttaatcttgggagaagtgtcttctgggacatgaagaatcggctg
cctagaagtattactacattggagtgggaaaacagctttgtctctgtttatagcaaagat
aacccaaacttgctcttcagcatgtgtggatttgaagttcggatactgcctaagataaga
atgacccaagaggcattcagcaatacaagagacggagtctggaatctacaaaatgagcag
actaaggaacgcacagctgttgctttcttgcgtgtagatgacgagcacatgaaggtgttt
gagaatcgtgtcaggcagatcctcatgtcctctggttctacaacattcacaaagattgtt
aacaaatggaacactgctcttattggcctcatgacatatttccgtgaagcaacagtacat
acccaagaattactggacctgctggtcaaatgtgaaaacaagatacaaactcgtattaag
attggtttgaactctaaaatgcccagtaggtttcctcctgttattttctacacgccaaag
gaaattggagggctgggaatgttgtcaatgggtcacatattgatcccgcagagtgatctt
aggtatagtcagcaaacagatgttggcgtgacacatttcagaagtggaatgagccatgaa
gaggaccaattgattccaaatctttatcgatacatacagccgtgggagagtgagttcatt
gactctcagagagtttgggccgagtatgctttgaaaaggcaggaagcccaggcacagaat
aggcgtttgacccttgaagatctggaagattcatgggatcgtggaatacctcgaatcaat
acattgttccagaaggatcgccacacccttgcatatgacaaaggatggagagtgagaaca
gactttaaacagtaccaagttcttaagcagaatccattctggtggacacaccagaggcat
gatggaaagctatggaacctgaataactatcgtactgatgtgattcaagctcttggagga
gttgaaggaattcttgagcatacattattcaaaggaacatatttccctacttgggagggt
cttttctgggagaaagcttcaggttttgaggaatctatgaagtacaagaaactgactaat
gctcaacgatctgggcttaatcaaatccctaatcgtaggtttactctttggtggtcgcca
acaataaatagggccaatgtctatgttggtttccaagtacagctggacctgactgggata
tttatgcatgggaagattccaactctgaagatatctttgatacagatcttccgtgcacat
ttgtggcagaagatccatgagagtgttgtcatggatctttgccaagttttggatcaagag
ttggatgcgttggaaattgagaccgtacagaaggaaacaattcatccaagaaagagttac
aaaatgaatagctcgtgcgctgacatcctcctttttgctgcacatagatggccaatgtca
aaacctagtcttgtggccgaatcgaaggatgtgtttgaccagaaggctagtaacaaatac
tggatagatgtgcagcttcgatggggtgactatgattctcatgatattgagcgttataca
cgagcaaagttcatggattacacaacggacaacatgtctatttatccatctcctactggt
gtaatgattggacttgaccttgcttacaacttgcattccgcctttggtaactggttccct
ggttcaaaaccattgcttgcccaagccatgaacaagattatgaagtcaaatcctgcactc
tatgttctgagggagcgcataaggaaagggttgcaattgtattcttcagagcccacagaa
ccatatttatcatctcagaattatggagagattttcagcaatcaaattatatggtttgtt
gatgacacaaatgtgtaccgagtgaccatccacaagacctttgagggaaacctgacgaca
aagcccataaatggtgcaattttcattttcaatcctaggacaggacaactgtttttgaag
gtcattcacacaagtgtgtgggcagggcaaaagcgtcttggccagctggccaagtggaaa
acagccgaagaagtggctgcgcttgtaaggtctttgccagttgaagaacaacctaagcaa
attattgtgactaggaaaggaatgcttgatcctttggaggtccacttgctcgattttccg
aatattgttatcaaaggaagtgagctgcagttaccattccaggcctgtttgaagatagag
aaattcggtgatcttatactgaaggctacggagccacaaatggttctgttcaacatatat
gatgattggttgaagagcatctcgtcctatacagcattctccaggctcatcctcatcctg
cgtgcacttcatgtgaacaatgaaaaggctaagatgctactcaagcctgacaagtcggtc
gttactgagcctcaccacatctggccttcacttacagatgaccagtggatgaaggttgaa
gtagcgcttagagatctcattctctctgactatgcaaaaaagaacaatgtcaacacatca
gcattgacgcagtctgagatccgtgatattatacttggagctgagattactcctccatcc
cagcagcgacaacagatagccgagattgagaaacaggccaaggaagcaagtcaactgaca
gcggttaccacaaagaccactaatgtccatggtgatgagttgattgttactactacaagt
ccctatgagcaagctgcctttggctctaaaacagattggcgtgtgagagcaatttctgca
acaaatctctatctccgtgtgaaccacatatatgtaaattcagaggacataaaggagact
ggatatacgtacatcatgccaaagaatattctgaagaagttcatttgcattgccgatctg
cggacacaaattgctggttacttatatggtgtaagtccaccagataatcctcaggtgaag
gaaatccggtgtattgcaatgcctccacagtgggggacacatcagcaggtgcatctacct
tccggtcttccagagcatgattttctcaatgacttggagcctttgggatggatgcacaca
caaccaaatgaacttcctcagttgtctccacaggatgttacttcacatgctcggatcctg
gagaacaacaaacactgggatggagagaagtgtattatattgacatgcagtttcacacca
gggtcttgttcgttaactgcatataagctgacgccaacagggtatgaatggggacgtgct
aacaaagatacaggaagcaaccctcatggttacctgccgactcattacgagaaggtccag
atgctgttgagtgaccgattccttggcttttacatgatacctgataatggtccatggaat
tacaacttcatgggagtgaagcacactgttagcatgaagtacggggtgaagttaggtaca
cctcgggagtactacaatgaggatcaccgaccaacacatttcctggaattcagcaatatg
gaggaaggtgatactgctgaggcagatcgggaagatacatttacataa
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integrated database retrieval system
