Nicotiana tomentosiformis: 104084997
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Entry
104084997 CDS
T05025
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104084997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104084997
03012 Translation factors [BR:
nto03012
]
104084997
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104084997
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104084997
Translation factors [BR:
nto03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104084997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
NACHT
T2SSE
AAA_16
AAA_30
Dicer_dimer
ATPase
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104084997
NCBI-ProteinID:
XP_009587256
LinkDB
All DBs
Position
3:137729708..137741690
Genome browser
AA seq
1180 aa
AA seq
DB search
MPMPYTNLIQNCLKLRLKATQFLTIMSSTTTTSLQFCFHFKTDPLLHCPSQVRFFCSAKG
SSNSSVVLRRKRNGSSSSSFSFPYFYQQNLGYGRFAYDEYESQSESDRETESSKQLCDGT
LHNIEEWRWKLNMLMRKKGDQEVVSREKKDRRDFEHISALATRMGLHCRQYEKAVVFSKV
PLPNYRPDLDAKRPQREVVLPYGLQNRVDDLLKAHLSKKSANKENFAHNASLNDKELYEN
EKPFAQSVVAERILRRRSLEMRNRQEDWKGSPEGQKMQEIRRSLPAFKERETLLRAISEN
QVVVVSGETGCGKTTQLPQYILEAEIEAARGATCNIICTQPRRISAMAVSERVAAERGES
LGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLGGVTHVIVDEIHERGMNEDFL
LIVLKDLLPRRPELRLILMSATLNAELFSSYFGRAPMIHIPGFTYPVRSHFLENILEITR
YRLTPYNQIDNYGQDKMWKMQKQTDRKRKTQIASAVEESLEAADFGQYNPRTRDSLSCWN
PDSIGFNLIEHVLCHICKNERPGAVLVFMTGWDDINALKDQLQAHPLLGDPSRVLLLACH
GSMASAEQKLIFDKPEDGIRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPC
LLPSWISKASARQRRGRAGRVQPGECYHLYPRCVFEAFADYQLPELLRTPLQSLCLQIKS
LQLGSISDFLSKALQPPEPLSVQNAVEFLKTIGALDENENLTVLGQHLSMLPVEPKLGKM
IILGAVFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDFSDHLALVRAYDG
WRNAERQQSGYEYCWKNFLSAQTLKAMDSLRKQFLHLLKEIGLVDSFQSCNAWSNDEHLV
RAIICGGLFPGICSVVNKERSISLKTMEDGGVLLYSNSVNAQELQIPYPWLVFNEKVKVN
AVFLRDSTAVSDSVLLLFGGSIFGRALDGYLMMLGGYLEFFMSPSLANTYLSLKRELNEL
VHKKLLDRNFDVGSHGELLEAVRLLVSEDHCEGKFVFGRKPSPKKSAKELQKSISSTKGT
GGENPKSHLQTLLARAGHQSPNYKTTQLKNNKFRSTVIFNGLNFVGQPCGSKKDAEKDAA
AEALQWLTGETQSSSKAVEHMSALLKKSKSKKQLHSTKWR
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgcccatgccttacactaaccttattcaaaactgcctcaagctgaggctcaaagccact
caattcctcaccattatgtcttccactaccaccacttctctacaattttgtttccacttt
aaaacagaccctcttcttcactgcccgtcacaagttagattcttttgctcagccaagggc
tcttctaattcgtctgttgtattaaggcggaaaagaaatggttcatcttcttcttctttt
tcttttccgtatttttatcagcagaatttagggtatggtcgttttgcttatgatgagtat
gagtcccagtccgagtctgatcgtgaaactgagtcgtctaagcaactgtgtgatggaacc
cttcataatattgaagaatggaggtggaagctaaacatgttaatgcgcaaaaaaggtgac
caagaagtggtctcaagggagaaaaaggaccgtcgcgattttgagcatatatcagctctg
gcaactagaatgggtttgcattgccgccagtatgaaaaagcagttgtgtttagcaaagtc
ccattgccgaattataggccagatttggatgctaagcgtccacagagagaggtagtgtta
ccttatggattacaaaacagagtagatgatcttcttaaagcacatctttctaaaaagtcc
gcaaacaaggaaaactttgcacataatgcttctctcaatgataaagagctttatgagaat
gagaagccatttgcacaaagtgttgttgcagagcgaattctcaggcgaaggagcttggag
atgcggaatagacaagaagattggaaggggtctccagaaggccagaagatgcaagaaatt
cgaagaagtctcccagcatttaaagagagagagacattgcttagagctatttctgagaat
caggtggtggtcgtgtctggggaaactggatgtggtaagactacccaattgcctcagtac
attttagaagctgagattgaagctgctcgtggagctacttgtaatattatttgtactcaa
ccaaggcgaatatctgctatggctgtgtctgaaagagttgctgcagagcgtggggagagt
ctgggagaatctgtgggctacaaggttcggcttgagggcatgaaagggagggatacacgc
ctcttattttgcaccactggcattcttctgaggagattactggttgatagaaatttggga
ggtgtcactcacgttattgtagacgagattcatgaacggggaatgaatgaagatttcctt
ttgattgtccttaaagatctccttccccgtcgaccggaattgaggctgatcttgatgagt
gctactcttaacgctgagctcttctcttcctattttggccgcgctccaatgatccatatt
cctggttttacttatccagtccgaagtcattttctggaaaatattttggaaataactaga
tatcggttaactccatataatcaaattgataattatggtcaagacaagatgtggaaaatg
cagaagcagactgataggaagaggaagactcaaattgcttcagctgttgaggaatcacta
gaagcagctgattttgggcagtataatcctcgtactcgggattcactttcctgttggaat
cctgattcaataggcttcaacctcattgagcatgtgctttgccacatatgtaaaaacgaa
aggccaggtgctgtgttggttttcatgacaggttgggatgacattaatgctttgaaagat
cagctgcaggctcatcctctattgggagatccaagcagagtattgctgcttgcatgccat
ggttccatggccagtgcggagcagaaattgatttttgataagccagaagatggaataagg
aaaattgtattagctaccaacatggctgaaacaagtatcaccatcaatgatgtggttttt
gtggtcgactgtggaaaggcaaaagagacatcttatgatgcactcaacaacactccatgt
ttgcttccttcttggatttcaaaagcttctgctcgtcaaagaagaggaagagctggccgt
gttcaacctggggagtgttatcatctctatcctagatgtgtatttgaagcttttgcagat
tatcaactgccggagcttctgaggacaccattacaatctctatgtttgcagattaaaagc
ttacaacttggaagtatttcagactttctatctaaggcattgcagccaccagaaccacta
tctgttcaaaatgctgttgagtttctgaagacaataggggctctagatgagaatgaaaat
ctgacagtacttggacaacacttatcaatgcttccagttgaaccaaaactgggaaaaatg
ataatattaggtgcagtattcaactgcctggatccaattatgacagttgttgctggttta
agtgttagagacccatttttaatgccatttgacaaaaaagatctggctgagtctgccaaa
gcccagttttctgctcgtgacttcagtgatcatcttgctcttgttcgggcttatgatggc
tggagaaacgctgagaggcagcaatctggttatgagtactgttggaaaaatttcctttct
gcgcaaactctcaaagcgatggactcccttcgaaagcaatttttgcatctgcttaaggaa
attggtctagttgatagctttcagagttgtaatgcctggagtaatgatgaacatcttgtt
cgagcaattatatgtggtgggttattccctggcatatgctctgttgtgaacaaggagagg
tcaatctcactgaaaacaatggaggatggtggagttcttttgtactctaattctgttaat
gcccaagagctgcaaatcccatatccatggcttgtcttcaatgagaaagttaaagtgaat
gcagtattcctgcgtgattctacagctgtatctgattctgtcctactcttgtttggcgga
agcatttttggacgagctctagatggatacttgatgatgcttggagggtacttggagttt
ttcatgagcccctcactggcaaatacttatttaagcttgaagagggagcttaatgaactt
gtccataagaaacttttggaccgtaattttgatgtaggcagtcatggtgagctattagaa
gctgttagattgctggtgtcggaggatcactgtgaaggtaagtttgtctttggtcgtaaa
ccgtccccaaagaagtccgcaaaggagttgcaaaaaagcatcagttcaacaaagggcact
ggtggtgaaaatccgaagtctcatctccagacattgcttgctcgggctggtcaccaatca
cccaattacaagactactcaactaaaaaataataagttccgctccactgtaatattcaat
gggttgaactttgttggtcagccttgtggtagtaagaaggacgctgaaaaagatgcagct
gctgaagctctgcagtggttgactggtgagacacagtcgtcttctaaggctgttgaacac
atgtcagcacttttgaagaaaagcaagagtaaaaagcaacttcatagtacgaaatggagg
taa
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