KEGG   Nicotiana tomentosiformis: 104085138
Entry
104085138         CDS       T05025                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
nto  Nicotiana tomentosiformis
Pathway
nto03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    104085138
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nto03019]
    104085138
   03036 Chromosome and associated proteins [BR:nto03036]
    104085138
Messenger RNA biogenesis [BR:nto03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     104085138
Chromosome and associated proteins [BR:nto03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     104085138
    COMPASS/SET1 complex (yeast)
     104085138
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40 WD40_CDC20-Fz Beta-prop_EML_2 EIF3I WDR55 Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_TEP1_C Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_VPS8 Beta-prop_DCAF4 Cytochrom_D1 KNTC1_N Beta-prop_Nup120_160 PQQ_2 VPS11_N Beta-prop_WDR35_TULP_N BBS2_Mid
Other DBs
NCBI-GeneID: 104085138
NCBI-ProteinID: XP_009587408
LinkDB
Position
2:complement(45709609..45717004)
AA seq 332 aa
MAGGQPEREDKVSLEITEEILQSMEVGMTFRDYSGRISSMDFHKTSNYLVTASDDESIRL
YDVANATCLKTINSKKYGVDLVSFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
RDRVVSLSLCSRKEYFISGSLDRSVLLWDQRADKCQGLLRVQGRPATAIDEQGLVFAIAF
GGYIRMFDARNYEKGPFEIFSVGGDLSDANIVKFSNDGRLVLLTTTDGHIHVLDSFRGTL
LSTYNVQPVSSSSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTDTEPPMIK
WAPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
NT seq 999 nt   +upstreamnt  +downstreamnt
atggcaggtggacaacctgagagagaagacaaggtctcactagagatcactgaagaaatc
ttacagagcatggaagtcggcatgacgtttcgcgactatagtggtaggatcagttcaatg
gattttcataaaacatcaaattatctggtgacggccagtgatgatgagtccattcgtcta
tatgatgttgcaaatgcaacatgtttgaagactattaacagcaaaaagtacggggttgat
ctggttagcttcacttcccatcctacaactgttatatactcctccaagaatggttgggat
gaatctctacggcttctttcattgcatgacaacaagtacttgcggtatttcaagggtcat
cgtgacagggttgtgtctcttagcttatgctctaggaaggagtattttatctctggctcg
cttgatcgatctgttctactttgggatcaaagagctgataaatgccagggccttcttcga
gtgcaaggaagaccagctactgccattgatgagcaaggacttgtctttgctattgctttt
ggaggatatataaggatgtttgatgcacgcaattatgaaaaggggccttttgaaattttc
tctgttggaggagatttgtctgatgctaacatcgttaagttcagtaatgatgggagactt
gtgcttttgacaactacggatgggcatattcatgtgcttgattcgtttcgtggcacactt
ttatcaacatataatgtgcagcctgtttcaagtagttcaacattggaggcatctttcagc
ccagaaggaatgtttgttatatcaggatcaggtgatggtagtgtgtatgcttggagtgtc
cggagtgggaaagaggtagccagttggatgagtacagatactgagccacctatgatcaag
tgggctccaggaagcttaatgtttgtgactggttcttctgagctttcattttggatccca
gacttatcgaaattgggagcttatgtgggaagaaaatag

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