Nicotiana tomentosiformis: 104085738
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Entry
104085738 CDS
T05025
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104085738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104085738
03009 Ribosome biogenesis [BR:
nto03009
]
104085738
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104085738
Spliceosome [BR:
nto03041
]
Complex A
U1 snRNP components
U1 related factors
104085738
Complex B
104085738
Ribosome biogenesis [BR:
nto03009
]
Eukaryotic type
Pre-60S particles
Helicases
104085738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
104085738
NCBI-ProteinID:
XP_009588144
LinkDB
All DBs
Position
9:66469764..66478515
Genome browser
AA seq
1161 aa
AA seq
DB search
MPTAEAAPASLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPSALAPPLP
PGQPPEAATPKLAPIPGASTVQQNDAHGQQSQQACTQQGQQMTQMSQHSQVTQQVPHGSQ
GVSIGQQQGSAAGPAMQQVPFTLQFRPQMIQQPGHQMPSQMGQTPNQPGPHVSQPVMQQI
MPQQLGPQTQAFPGVQMGQPHGYQFSHHQTPQTPQHITYSQNLPPQGQQIPQQNQHVPQN
QQYSHQQEHKMGFQQREDVDFPHGRQVGFSPQQVQQTGASSTQNLPMGTGSVIRPQMSAQ
PAQALPFGGSSVNIQQPSSLGQWQQNANDSGHKPPGPRFPGEMGSGMVHGQELDTHPVGS
KGYEENSFGRGGNEYYYTSNMDGRIRPPPQQPKLAAIPIARNQHETRMGDPPLQNPAPAL
PSGFNSTGGPPMQSIYGQAAGGPPFPNPNLMRPLAALTGPPGAIHPSPVEVYLQKHEVTA
TGGDVPAPFMTFEDTGFPPEILREIHVAGFTSPTPIQAQTWPIALQNRDIVAIAKTGSGK
TLGYLIPAFVHLKRCRNNPQNGPTVVVLAPTRELATQIQDEALKFGRASRVSCTCLYGGA
PKVHQLKELERGADIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKI
VNEIPPQRQTLMYTATWPKEVRKIAGDLLRNPVQVNIGNVDQLAANKSITQYVEVVPQME
KQRRLEQILRSQERGSKAIIFCSTKKLCDQLARSIGRSFGAAAIHGDKSQGERDWVLNQF
RSGKTPILVATDVAARGLDIPDIRVVINYDFPTGIEDYVHRIGRTGRAGATGISYTFLSD
QDWKYAPDLVKVLEGANQHVPPNVREMALRAGGRDRGGMNRFDLVEGDGSRTRWDSGGRG
GIRDGGFGGRGGMRDGGFGGRGGMRDGGFDNPGGMRDGGFGGRGGRESNFGGRGGRDGHF
GGRGGRDGHFGGRGGMRDSYFSGRGGRGGAVGGWDRNARYDSSDVRGRDRGRGRGHFDNR
RDMPSRSRGRSYSPSPERVRTWGSRSRSRSRSRSRSRSRSRSRSYSRSYSRSRSYSPRHS
RSCSRSRSRSHDRYQRRPRQSKFDQMEPDPGMSNVQVAPSGMPPLSIGAPIDGFSGAAPV
EFKPNMEVAPESGMSPMSPGT
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgccaactgctgaggcagctccggcttccttaggacctcgttatgcacccgatgatcca
actttaccgcaaccttggaagggcttaattgacggcagtactgggttattgtactactgg
aatccagaaactaatgttactcaatatgagaagccatcagctttagcccctccactgccg
cctggtcaaccacctgaagctgctacacctaagttggctcctataccaggagctagtaca
gtgcaacaaaatgatgctcatggccaacaaagccagcaggcgtgtactcaacaaggccaa
caaatgacacagatgtcccaacattcacaagtaacacaacaggtaccacatggatcacaa
ggtgtttcaatagggcagcaacaaggatcagcagcgggtcctgctatgcaacaggtaccc
tttacgctgcagtttcgaccccaaatgatccagcagcctggtcatcagatgccatctcaa
atggggcaaactcctaaccagccaggcccacatgtttctcaaccggtgatgcaacaaata
atgccacaacaacttggcccccaaacacaagcatttccaggtgtacagatgggacagcca
catggttatcaattttctcatcaccagacaccacagacaccacagcatattacgtattca
cagaacttgcctccacaaggacagcaaattccacagcagaatcagcatgttccgcagaat
caacagtactcccatcaacaagagcataaaatgggatttcagcaaagggaagatgttgat
ttccctcatgggagacaagttgggttttctccacaacaagttcagcaaactggtgcatcc
tctactcagaatctgcctatggggactggatctgttatcagacctcagatgtctgctcag
cctgctcaagctttgccgtttggtgggtcttctgtaaatattcaacaaccatcatctttg
gggcagtggcagcaaaatgcaaatgattcaggtcacaagccacccggtccacgatttccc
ggtgaaatgggctcaggtatggtacatggccaggagctggatacgcatccagttggatca
aagggttatgaggaaaactcatttggaagaggaggaaatgagtattattacaccagtaac
atggatggtcggattaggcctccgcctcagcaacccaagcttgcagctatacctatagca
agaaatcagcatgaaacgagaatgggtgatcctccgcttcaaaatccagcaccggctctt
cctagtgggttcaatagtacaggtggtcctccaatgcaaagtatctatggtcaagcagct
ggtggccccccatttccaaatcctaacctcatgaggccacttgcagcactcactggacct
cctggagctattcatccatcgcccgttgaggtttaccttcagaagcatgaagtgactgcg
acaggtggtgatgtccccgctccattcatgacatttgaagatactggcttccctccagaa
atactcagagagattcatgttgcgggattcacttcgcccactcccattcaggcacaaaca
tggcccattgcgttgcaaaatagggatatagtagccattgccaagacaggttctggcaaa
acattgggctatctgattcctgcatttgtccaccttaagcgatgccgcaataatcctcaa
aatggcccaacagtagtggttttagctccaacacgagagcttgcaacacaaatacaagat
gaagctcttaaatttggccgagcttcaagggtttcttgcacatgcttgtacggaggtgca
ccgaaggttcaccagttaaaagaactagagcgcggagcagacattgttgttgcaactcct
ggtcggcttaatgacatccttgaaatgaaaagaattgactttaggcaggtttctcttctc
gtgctagatgaggctgatcgaatgcttgacatgggttttgaacctcagattcgcaagatt
gtaaatgaaatacccccacaaagacaaacacttatgtacacagcaacctggcccaaagaa
gtgcgaaaaatagctggcgatcttcttcgaaatcctgtccaggttaatatcgggaatgtt
gatcagcttgcagcaaacaagtctatcacacagtacgttgaagtagtcccgcaaatggag
aagcagagacggttggagcagattcttagatcccaagaaaggggttctaaagctattata
ttctgttccacaaaaaagttgtgtgaccaacttgcacgcagcattggccgaagctttgga
gccgcagctattcatggagacaagtcccagggtgagagggactgggttctcaatcaattt
cgctctggtaagaccccaattttagtagcaactgatgttgctgctagaggactggacata
cccgatattagagtggtgatcaactatgattttccgactgggattgaggattatgttcat
cgaattggaagaactggtagggctggtgcaactggtatttcatacacctttttatctgat
caggactggaaatatgctccagatctagttaaagttctggaaggcgcaaaccagcacgtg
cctccgaatgtaagagagatggctttacgtgctggtggcagggatagaggtggaatgaac
cgatttgatcttgttgagggtgatggtagccgcacacgctgggattctggtggccgtggt
gggattagggatggtgggtttggtggccgtggtgggatgagggatggtgggtttggtggc
cgtggtgggatgagggatggtgggtttgataatcctggtgggatgagggatggtgggttt
ggtggccgtggtggaagggagagcaactttggtggccgtggtgggagagatggtcacttt
ggtggccgtggtgggagagatggtcactttggtggccgtggtgggatgagggacagctat
tttagtggccgtggtggcaggggtggcgcagttggtggttgggacaggaatgctcggtat
gatagctcggatgtgcgaggacgtgatagaggccgagggcgtgggcattttgacaataga
agagacatgccgagtcggagtcgaggaagaagttacagccctagtccggagagggtgcga
acatggggtagccgaagcaggagtcgcagcagaagcaggagtcgcagcagaagtcgcagc
agaagcaggagctatagcaggagttacagccggagccgcagttatagcccaaggcatagt
cgcagctgtagccgcagccgcagccgtagtcacgatagatatcaaaggaggccacgccaa
tctaaattcgatcagatggaaccagatccagggatgtcaaatgttcaggttgctccatct
gggatgcctccattgtctataggtgcaccaattgatggattttctggagctgcaccagtg
gaatttaagccgaatatggaggtagctccagaatctggtatgtcgcccatgtctccagga
acatga
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integrated database retrieval system
